Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHS82_RS18935 Genome accession   NZ_CP107928
Coordinates   4430396..4431805 (+) Length   469 a.a.
NCBI ID   WP_057577692.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00425     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4425396..4436805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS82_RS18920 (OHS82_18930) - 4426358..4427290 (-) 933 WP_057577689.1 Ppx/GppA phosphatase family protein -
  OHS82_RS18925 (OHS82_18935) - 4427425..4428231 (+) 807 WP_057577690.1 hypothetical protein -
  OHS82_RS18930 (OHS82_18940) - 4428365..4430176 (-) 1812 WP_063894241.1 hypothetical protein -
  OHS82_RS18935 (OHS82_18945) radA/sms 4430396..4431805 (+) 1410 WP_057577692.1 DNA repair protein RadA Machinery gene
  OHS82_RS18940 (OHS82_18950) disA 4431887..4433011 (+) 1125 WP_057577693.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHS82_RS18945 (OHS82_18955) - 4433091..4433942 (-) 852 WP_328434189.1 hypothetical protein -
  OHS82_RS18950 (OHS82_18960) - 4434180..4435118 (+) 939 WP_328434190.1 A/G-specific adenine glycosylase -
  OHS82_RS18955 (OHS82_18965) - 4435520..4436062 (+) 543 WP_057577696.1 SigE family RNA polymerase sigma factor -
  OHS82_RS18960 (OHS82_18970) - 4436137..4436781 (+) 645 WP_057578083.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49588.67 Da        Isoelectric Point: 7.4353

>NTDB_id=649541 OHS82_RS18935 WP_057577692.1 4430396..4431805(+) (radA/sms) [Streptomyces sp. NBC_00425]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTTSALPIGQVDGRQATARPTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRMRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIVDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGRIPAGMKVLEVADMGDALRVLPRSRRREAPQDAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=649541 OHS82_RS18935 WP_057577692.1 4430396..4431805(+) (radA/sms) [Streptomyces sp. NBC_00425]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGTCCGTCCTACCGCTGCACGGAATGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGCACCACTGCGCCGGGGC
GCGTCACCACCTCCGCCCTGCCCATCGGCCAGGTCGACGGGCGGCAGGCCACCGCCCGCCCCACCGGCGTGGCCGAGCTG
GACCGCGTCCTCGGCGGCGGGCTCGTGCCCGGCGCGGTCGTGCTCCTGGCGGGCGAGCCGGGCGTCGGCAAGTCGACCCT
GCTGCTGGACGTGGCCGCCAAGTCGGCGAGCGACGAGCACCGCACCCTTTACGTCACGGGCGAGGAGTCCGCCTCGCAGG
TCCGGATGCGCGCCGACCGCATCGGCGCCATCGACGACCACCTGTACCTCGCGGCGGAGACCGATCTGGCGGCCGTCCTC
GGCCACTTGGACGCGGTCAAGCCGTCCCTGCTGATCGTGGACTCCGTGCAGACCGTGGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGCGCCCTGATCCGCGCCTCCAAGGAACGCGGCATGTCCACGCTGC
TGGTGGGCCACGTCACGAAGGACGGCGCGATCGCCGGCCCCCGCCTCCTCGAACACCTCGTCGACGTCGTGCTGAGCTTC
GAGGGCGACCGGCACGCCCGGCTGCGCCTGGTGCGCGGCGTCAAGAACCGTTACGGCGCGACCGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATTACGGGCCTTGCGGACCCGAGCGGACTTTTCCTGACCCGTCGTGACGAACCGGTACCTG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGGCCCCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCCCAGATC
CCCTCCCCCCGCCGCACGACGTCCGGCCTGGAGACCTCGCGCGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCGGAGCCCGCCGCGGACCTCG
CGATCGCCCTCGCCCTGGCGTCCGCCGCCAGTGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAGGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGGCTCGCCGAGGCCCACCGTCTGGGCTTCACGCACGCACTCGT
ACCGGGCGATCCCGGCAGGATCCCCGCGGGCATGAAGGTCCTGGAAGTGGCCGACATGGGGGACGCCCTGCGGGTCCTGC
CGCGCTCCCGTCGCCGAGAGGCCCCACAGGACGCGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(81-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409
  radA Streptococcus mitis SK321

44.235

90.618

0.401
  radA Streptococcus mitis NCTC 12261

44.235

90.618

0.401