Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS82_RS14670 Genome accession   NZ_CP107928
Coordinates   3505878..3506531 (+) Length   217 a.a.
NCBI ID   WP_057584025.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00425     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3500878..3511531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS82_RS14650 (OHS82_14660) - 3502609..3502932 (-) 324 WP_057584016.1 STAS domain-containing protein -
  OHS82_RS14655 (OHS82_14665) - 3503402..3503974 (+) 573 WP_057584018.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OHS82_RS14660 (OHS82_14670) - 3503971..3504540 (-) 570 WP_057584022.1 hypothetical protein -
  OHS82_RS14665 (OHS82_14675) - 3504694..3505881 (+) 1188 WP_328433982.1 histidine kinase -
  OHS82_RS14670 (OHS82_14680) vraR 3505878..3506531 (+) 654 WP_057584025.1 response regulator transcription factor Regulator
  OHS82_RS14675 (OHS82_14685) - 3506658..3508478 (+) 1821 WP_057584026.1 glycoside hydrolase family 18 chitinase -
  OHS82_RS14680 (OHS82_14690) - 3508520..3508966 (-) 447 WP_057584027.1 DUF2550 domain-containing protein -
  OHS82_RS14685 (OHS82_14695) - 3509108..3509482 (-) 375 WP_057584029.1 F0F1 ATP synthase subunit epsilon -
  OHS82_RS14690 (OHS82_14700) atpD 3509616..3511052 (-) 1437 WP_057584031.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 22638.25 Da        Isoelectric Point: 4.8121

>NTDB_id=649530 OHS82_RS14670 WP_057584025.1 3505878..3506531(+) (vraR) [Streptomyces sp. NBC_00425]
MSSVIRVLVAEDQSAVRAGLVLILRSASDIEVVGEAADGEQAVALARELRPDLVLMDVQMPRLDGVAATRKVVEEGLADV
LVLTTFDLDAYVFGALRAGAAGFLLKDTEARDLLAAVRTVAAGEGLIAPAVTRRLIAEFAAVPARAPGADPAVLDALTRR
EREVLACLGQGLSNAGIAERLDMAEATVKTHVSRLLGKLGLRSRVQAAVLAQELGVG

Nucleotide


Download         Length: 654 bp        

>NTDB_id=649530 OHS82_RS14670 WP_057584025.1 3505878..3506531(+) (vraR) [Streptomyces sp. NBC_00425]
ATGAGCTCCGTCATCCGCGTGCTCGTGGCCGAGGACCAGTCCGCCGTGCGCGCCGGTCTGGTCCTCATCCTGCGCAGCGC
GTCCGACATCGAGGTGGTCGGGGAGGCCGCGGACGGGGAGCAGGCGGTGGCGCTGGCCCGGGAGCTGCGGCCGGACCTGG
TGCTGATGGACGTTCAGATGCCGCGCCTCGACGGGGTGGCGGCGACCCGGAAGGTCGTCGAGGAGGGGCTGGCGGACGTC
CTCGTACTGACCACCTTCGACCTCGACGCGTACGTCTTCGGGGCGTTGCGTGCCGGTGCGGCCGGGTTCCTGCTCAAGGA
CACGGAGGCGCGGGACCTGCTGGCGGCGGTCCGGACCGTGGCGGCCGGCGAGGGACTGATCGCCCCGGCCGTGACCCGTC
GTCTGATCGCCGAGTTCGCCGCCGTGCCCGCGCGGGCGCCCGGGGCCGATCCGGCCGTCCTCGACGCGCTCACCCGGCGT
GAACGCGAGGTGCTGGCCTGTCTGGGACAGGGGCTGTCCAACGCGGGCATCGCCGAACGCCTCGACATGGCGGAGGCGAC
CGTGAAGACGCACGTCAGTCGGCTGCTGGGCAAGCTGGGACTGCGCAGCCGGGTGCAAGCGGCGGTGCTGGCGCAGGAGT
TGGGCGTCGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.346

95.853

0.396
  degU Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.392