Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG389_RS25845 Genome accession   NZ_CP107924
Coordinates   5596853..5597494 (-) Length   213 a.a.
NCBI ID   WP_328300830.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00435     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5591853..5602494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG389_RS25825 (OG389_25830) atpD 5592183..5593622 (+) 1440 WP_328300827.1 F0F1 ATP synthase subunit beta -
  OG389_RS25830 (OG389_25835) - 5593752..5594126 (+) 375 WP_328300828.1 F0F1 ATP synthase subunit epsilon -
  OG389_RS25835 (OG389_25840) - 5594259..5594708 (+) 450 WP_328300829.1 DUF2550 domain-containing protein -
  OG389_RS25840 (OG389_25845) - 5594793..5596619 (-) 1827 WP_328304095.1 glycoside hydrolase family 18 chitinase -
  OG389_RS25845 (OG389_25850) vraR 5596853..5597494 (-) 642 WP_328300830.1 response regulator transcription factor Regulator
  OG389_RS25850 (OG389_25855) - 5597491..5598699 (-) 1209 WP_328300831.1 histidine kinase -
  OG389_RS25855 (OG389_25860) - 5598873..5599451 (+) 579 WP_328300832.1 hypothetical protein -
  OG389_RS25860 (OG389_25865) - 5599448..5600020 (-) 573 WP_328300833.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OG389_RS25865 (OG389_25870) - 5600184..5601032 (+) 849 WP_328300834.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  OG389_RS25870 (OG389_25875) - 5601207..5601530 (+) 324 WP_243336243.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22440.09 Da        Isoelectric Point: 4.9717

>NTDB_id=649486 OG389_RS25845 WP_328300830.1 5596853..5597494(-) (vraR) [Streptomyces sp. NBC_00435]
MTIRVVVAEDQSAVRAGLVLILRSAGDIEVVGEAADGEEAVRLARGLRPDLVLMDVQMPRLDGVSATRQVVAEGLADVLV
LTTFDLDEYVFGALRAGASGFLLKDADAAELIGAVRTVARGEGMIAPAVTRRLIAEFAAPRAVRVPVPAAVESLTPRERE
VLGCLGKGLSNAEIAVRLEMAEATAKTHVSRLLAKLELRSRAQAAVLAQELGL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=649486 OG389_RS25845 WP_328300830.1 5596853..5597494(-) (vraR) [Streptomyces sp. NBC_00435]
GTGACGATCAGGGTCGTGGTGGCGGAGGACCAGAGCGCGGTACGGGCCGGGCTGGTCCTGATCCTGCGCAGCGCGGGCGA
CATCGAGGTGGTGGGCGAGGCCGCGGACGGGGAGGAGGCCGTGCGCCTGGCCCGCGGGCTGCGGCCCGACCTGGTGCTCA
TGGACGTGCAGATGCCGCGCCTGGACGGGGTCTCGGCGACCCGCCAGGTGGTCGCGGAGGGGCTGGCGGACGTCCTGGTG
CTCACCACCTTCGACCTGGACGAGTACGTCTTCGGGGCGCTGCGCGCGGGGGCGTCCGGTTTCCTGCTGAAGGACGCGGA
CGCGGCGGAGCTGATCGGGGCGGTACGGACGGTCGCGCGCGGGGAGGGCATGATCGCCCCCGCGGTGACCCGCCGGCTGA
TCGCCGAGTTCGCGGCTCCGCGGGCCGTACGGGTGCCCGTGCCGGCGGCGGTGGAGTCCCTGACCCCGCGCGAGCGGGAG
GTGCTGGGGTGCCTGGGCAAGGGGTTGTCGAACGCGGAGATCGCGGTGCGCCTGGAGATGGCGGAGGCGACGGCGAAGAC
CCACGTCAGCAGGCTGCTGGCGAAGCTGGAGCTGCGCAGCCGGGCCCAAGCCGCCGTGCTGGCACAGGAGTTGGGGCTCT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.654

100

0.408
  degU Bacillus subtilis subsp. subtilis str. 168

38.739

100

0.404