Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG389_RS21770 Genome accession   NZ_CP107924
Coordinates   4733645..4735063 (-) Length   472 a.a.
NCBI ID   WP_328300142.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00435     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4728645..4740063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG389_RS21745 (OG389_21745) - 4729023..4729583 (-) 561 WP_328300137.1 SigE family RNA polymerase sigma factor -
  OG389_RS21750 (OG389_21750) - 4729671..4730681 (-) 1011 WP_328300138.1 A/G-specific adenine glycosylase -
  OG389_RS21755 (OG389_21755) - 4730711..4731319 (-) 609 WP_328300139.1 phosphatase PAP2 family protein -
  OG389_RS21760 (OG389_21760) - 4731480..4732298 (+) 819 WP_328300140.1 hypothetical protein -
  OG389_RS21765 (OG389_21765) disA 4732377..4733501 (-) 1125 WP_328300141.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG389_RS21770 (OG389_21770) radA/sms 4733645..4735063 (-) 1419 WP_328300142.1 DNA repair protein RadA Machinery gene
  OG389_RS21775 (OG389_21775) - 4735221..4737080 (+) 1860 WP_328300143.1 hypothetical protein -
  OG389_RS21780 (OG389_21780) - 4737132..4737998 (-) 867 WP_328300144.1 hypothetical protein -
  OG389_RS21785 (OG389_21785) - 4738062..4738991 (+) 930 WP_328300145.1 Ppx/GppA phosphatase family protein -
  OG389_RS21790 (OG389_21790) - 4739160..4739993 (+) 834 WP_328300146.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 49511.69 Da        Isoelectric Point: 8.0022

>NTDB_id=649475 OG389_RS21770 WP_328300142.1 4733645..4735063(-) (radA/sms) [Streptomyces sp. NBC_00435]
MAAARTSRSSAKDRPSYRCTECGYSTAKWLGRCPECQAWGTVEELGGAPAVRTTAAGRVTTAAVPIGQVDVRTATARSTG
VDELDRVLGGGLIPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYITGEESASQVRLRAERIKALSDHLYLAAETDL
SAVLGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDV
VLSFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTV
DSQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIG
EVGLAGEVRRVTGVQRRLAEAHRLGFTHALVPVDPGKVPAGMRVTEVADMGDALRVLPRGRTRTPSKDRDEG

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=649475 OG389_RS21770 WP_328300142.1 4733645..4735063(-) (radA/sms) [Streptomyces sp. NBC_00435]
ATGGCTGCTGCCCGTACATCCCGTTCGTCCGCCAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGGTACTCCACCGC
CAAGTGGCTCGGCCGGTGCCCCGAGTGCCAGGCCTGGGGGACCGTCGAGGAGCTGGGCGGGGCGCCCGCCGTCCGGACCA
CCGCGGCCGGCCGGGTCACCACGGCCGCCGTGCCGATCGGGCAGGTCGACGTCCGGACCGCGACCGCCCGCAGCACCGGC
GTGGACGAGCTGGACCGGGTGCTGGGCGGTGGGCTGATCCCCGGGGCCGTCGTGCTGCTCGCGGGGGAGCCGGGCGTGGG
CAAGTCCACGCTGCTGCTCGACGTCGCGGCGAAGGCGGCCAGCGACGAGCACCGCACGCTCTACATCACGGGCGAGGAGT
CGGCGAGCCAGGTGCGGCTGCGGGCCGAGCGGATCAAGGCGCTCAGCGACCACCTCTACCTCGCCGCCGAGACGGACCTG
TCCGCCGTCCTCGGACACCTCGACGCGGTGAAGCCCTCGCTGCTGATCCTGGACTCCGTACAGACCGTGGCCTCCCCCGA
GATCGACGGTGCGCCCGGCGGCATGGCGCAGGTCCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGA
TGTCCACGCTGCTCGTCGGCCACGTCACCAAGGACGGGGCGATCGCCGGTCCCCGGCTGCTGGAACACCTCGTGGACGTC
GTCCTGAGCTTCGAGGGCGACCGGCACGCGCGGCTGCGCCTCGTACGCGGTGTGAAGAACCGGTACGGAGCGACGGACGA
GGTCGGCTGCTTCGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGCCGTGCCG
AGGCCGTCCCCGGCACCTGTCTGACGGTGACCCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACGGTG
GACTCGCAGATCCCCTCGCCGCGCCGGACCACCTCCGGGCTGGAGACCTCGCGCGTCTCGATGATGCTGGCGGTGCTGGA
GCAGCGCGGGCGGATCACGGCGCTCGGCAAGCGGGACATCTACACCGCGACCGTGGGCGGGGTGAAGCTGACCGAGCCGG
CCGCCGACCTGGCCGTGGCGCTGGCGCTGGCCTCGGCGGCCAGCGACGTACCGCTCCCGAAGAATCTGGTCGCCATCGGG
GAGGTCGGTCTCGCGGGCGAGGTCCGGCGCGTGACGGGCGTGCAGCGGCGGCTCGCGGAGGCGCACCGGCTCGGTTTCAC
GCACGCGCTGGTGCCGGTGGATCCGGGGAAGGTGCCGGCCGGGATGAGGGTGACGGAGGTCGCGGACATGGGAGACGCGC
TGCGGGTCCTGCCGCGCGGCCGGACACGTACGCCCTCGAAGGACCGCGACGAGGGCTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(374-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)

AAA domain (AAA_25)

(86-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.605

95.975

0.409
  radA Streptococcus pneumoniae Rx1

43.868

89.831

0.394
  radA Streptococcus pneumoniae D39

43.868

89.831

0.394
  radA Streptococcus pneumoniae R6

43.868

89.831

0.394
  radA Streptococcus pneumoniae TIGR4

43.868

89.831

0.394
  radA Streptococcus mitis SK321

43.868

89.831

0.394
  radA Streptococcus mitis NCTC 12261

43.868

89.831

0.394