Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG389_RS20895 Genome accession   NZ_CP107924
Coordinates   4542988..4543587 (+) Length   199 a.a.
NCBI ID   WP_328299989.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00435     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4537988..4548587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG389_RS20875 (OG389_20875) - 4538196..4540745 (+) 2550 WP_328299985.1 glycosyltransferase 87 family protein -
  OG389_RS20880 (OG389_20880) - 4540865..4541515 (+) 651 WP_328299986.1 hypothetical protein -
  OG389_RS20885 (OG389_20885) - 4541593..4542318 (-) 726 WP_328299987.1 SLATT domain-containing protein -
  OG389_RS20890 (OG389_20890) - 4542586..4542930 (+) 345 WP_328299988.1 YbaB/EbfC family nucleoid-associated protein -
  OG389_RS20895 (OG389_20895) recR 4542988..4543587 (+) 600 WP_328299989.1 recombination mediator RecR Machinery gene
  OG389_RS20900 (OG389_20900) - 4543580..4544227 (+) 648 WP_328299990.1 DUF5063 domain-containing protein -
  OG389_RS20905 (OG389_20905) - 4544419..4545693 (+) 1275 WP_328299991.1 aspartate kinase -
  OG389_RS20910 (OG389_20910) - 4545690..4546778 (+) 1089 WP_328299992.1 aspartate-semialdehyde dehydrogenase -
  OG389_RS20915 (OG389_20915) - 4546996..4547715 (+) 720 WP_328303955.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21902.25 Da        Isoelectric Point: 5.1721

>NTDB_id=649470 OG389_RS20895 WP_328299989.1 4542988..4543587(+) (recR) [Streptomyces sp. NBC_00435]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHTLLEVKDKVRFCAVCGNVAQEERCNICRDPRRDLTV
ICVVEESKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=649470 OG389_RS20895 WP_328299989.1 4542988..4543587(+) (recR) [Streptomyces sp. NBC_00435]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGCCGCCTCGCGCACACGCTGCTCGAGGTCAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGCGACCCGCGCCGCGATCTCACGGTC
ATCTGTGTGGTCGAGGAGTCGAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGACCGGACGATCTGCGCATCCGGGAGCTGCTGGCGCGGCTCGCCGACGGCG
CGGTCACCGAGCTGATCCTCGCGACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
GGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472