Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG389_RS20810 Genome accession   NZ_CP107924
Coordinates   4524111..4524770 (-) Length   219 a.a.
NCBI ID   WP_328299972.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00435     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4519111..4529770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG389_RS20790 (OG389_20790) - 4519879..4520478 (+) 600 WP_328299968.1 hypothetical protein -
  OG389_RS20795 (OG389_20795) - 4520973..4521452 (-) 480 WP_328299969.1 MarR family transcriptional regulator -
  OG389_RS20800 (OG389_20800) - 4521528..4522442 (+) 915 WP_328299970.1 ABC transporter ATP-binding protein -
  OG389_RS20805 (OG389_20805) - 4522439..4524040 (+) 1602 WP_328299971.1 ABC transporter permease -
  OG389_RS20810 (OG389_20810) vraR 4524111..4524770 (-) 660 WP_328299972.1 response regulator transcription factor Regulator
  OG389_RS20815 (OG389_20815) - 4524767..4526092 (-) 1326 WP_328299973.1 histidine kinase -
  OG389_RS20820 (OG389_20820) - 4526181..4526852 (-) 672 WP_328299974.1 response regulator transcription factor -
  OG389_RS20825 (OG389_20825) - 4526849..4528240 (-) 1392 WP_328299975.1 sensor histidine kinase -
  OG389_RS20830 (OG389_20830) - 4528251..4529525 (-) 1275 WP_328299976.1 acyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23607.24 Da        Isoelectric Point: 4.6414

>NTDB_id=649468 OG389_RS20810 WP_328299972.1 4524111..4524770(-) (vraR) [Streptomyces sp. NBC_00435]
MTIRVLIVDDQMMVREGFSVLLNAMDGIEVAGEAVNGREAIAQVAALRPDVVLMDIRMPEMNGLEATREIVAADTDAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGDALLAPSVTKRLITEFSKLSETRTHVGSAGVSELTERE
TEVLVLIAQGLSNAEIADRLIIAESTIKTHVSRILVKLGLRDRTQAAVFAYETRLVTPG

Nucleotide


Download         Length: 660 bp        

>NTDB_id=649468 OG389_RS20810 WP_328299972.1 4524111..4524770(-) (vraR) [Streptomyces sp. NBC_00435]
ATGACGATCAGAGTGCTCATCGTCGATGACCAGATGATGGTCCGGGAGGGGTTCTCGGTCCTGCTGAACGCGATGGACGG
CATCGAGGTGGCCGGGGAGGCGGTGAACGGCCGGGAGGCCATCGCGCAGGTGGCGGCGCTGCGTCCGGACGTGGTGCTGA
TGGACATCCGGATGCCGGAGATGAACGGGCTGGAGGCGACGCGGGAGATCGTGGCCGCCGACACGGACGCGAAGGTGCTG
GTCCTGACGACCTTCGACCTCGACGAGTACGTGTACCAGGCGCTCCGGGCCGGGGCGTCGGGGTTCCTCCTCAAGGACGC
GTCCGCCCGCCAACTGGCCGATGGGGTCCGGGTGGTGGCGGCCGGTGATGCTCTGCTGGCCCCGTCGGTGACCAAACGGC
TCATCACGGAGTTCTCCAAGTTGTCGGAGACCCGCACGCACGTGGGGTCCGCGGGCGTCTCGGAGCTGACGGAGCGGGAG
ACCGAAGTACTGGTGCTGATCGCGCAGGGGCTGTCCAACGCGGAAATAGCGGACCGTCTGATCATCGCCGAATCCACCAT
CAAGACCCACGTGAGCCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGCACGCAGGCGGCGGTGTTCGCGTACGAGACCC
GGCTGGTGACCCCGGGCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.907

98.63

0.443
  degU Bacillus subtilis subsp. subtilis str. 168

41.256

100

0.42