Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | L2Z39_RS02890 | Genome accession | NZ_CP091338 |
| Coordinates | 588641..589021 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain AB231-VUB | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 583641..594021
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L2Z39_RS02860 (L2Z39_02860) | kdsB | 584544..585305 (+) | 762 | WP_196085333.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| L2Z39_RS02865 (L2Z39_02865) | - | 585317..586297 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| L2Z39_RS02870 (L2Z39_02870) | - | 586309..586650 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| L2Z39_RS02875 (L2Z39_02875) | - | 586668..587441 (+) | 774 | WP_215763529.1 | TatD family hydrolase | - |
| L2Z39_RS02880 (L2Z39_02880) | - | 587479..588087 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| L2Z39_RS02885 (L2Z39_02885) | - | 588097..588651 (+) | 555 | WP_005128793.1 | type II secretion system protein | - |
| L2Z39_RS02890 (L2Z39_02890) | xcpV | 588641..589021 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| L2Z39_RS02895 (L2Z39_02895) | xcpW | 589021..589722 (+) | 702 | WP_004747380.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| L2Z39_RS02900 (L2Z39_02900) | gspK | 589722..590681 (+) | 960 | WP_005128789.1 | type II secretion system minor pseudopilin GspK | - |
| L2Z39_RS02905 (L2Z39_02905) | - | 590911..591507 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| L2Z39_RS02910 (L2Z39_02910) | ung | 591558..592271 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| L2Z39_RS02915 (L2Z39_02915) | - | 592268..593392 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| L2Z39_RS02920 (L2Z39_02920) | tadA | 593399..593902 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=649445 L2Z39_RS02890 WP_000836911.1 588641..589021(+) (xcpV) [Acinetobacter baumannii strain AB231-VUB]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=649445 L2Z39_RS02890 WP_000836911.1 588641..589021(+) (xcpV) [Acinetobacter baumannii strain AB231-VUB]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACAAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACAAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |