Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB13_RS31430 Genome accession   NZ_CP107921
Coordinates   7048809..7049477 (-) Length   222 a.a.
NCBI ID   WP_266851347.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00440     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7043809..7054477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB13_RS31415 (OHB13_31400) - 7044439..7045944 (-) 1506 WP_328379321.1 phosphatase PAP2 family protein -
  OHB13_RS31420 (OHB13_31405) - 7046251..7047468 (+) 1218 WP_328379322.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  OHB13_RS31425 (OHB13_31410) - 7047500..7048681 (+) 1182 WP_328379323.1 MBL fold metallo-hydrolase -
  OHB13_RS31430 (OHB13_31415) vraR 7048809..7049477 (-) 669 WP_266851347.1 response regulator transcription factor Regulator
  OHB13_RS31435 (OHB13_31420) - 7049474..7050802 (-) 1329 WP_328379324.1 sensor histidine kinase -
  OHB13_RS31440 (OHB13_31425) - 7050789..7051955 (-) 1167 WP_328379325.1 acyltransferase -
  OHB13_RS31445 (OHB13_31430) - 7051948..7052916 (-) 969 WP_266851341.1 alpha/beta hydrolase -
  OHB13_RS31450 (OHB13_31435) - 7053132..7053764 (-) 633 WP_266851339.1 DedA family protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23657.28 Da        Isoelectric Point: 4.8096

>NTDB_id=649422 OHB13_RS31430 WP_266851347.1 7048809..7049477(-) (vraR) [Streptomyces sp. NBC_00440]
MTIRVLIADDQMMVRQGFTVLLNAEPDIEVVGQAVDGLDAIARVAELAPDVVLMDIRMPELGGIEATRRITGPGGAAVRV
LVLTTFDLDEYVYEALRAGAAGFLLKDASADELAHAVRVVAAGDALLAPNITKRLIAEFSRVTNSPRTAPKGRAGDLTER
ETEVLSLIAQGLSNAEIAGQLVVAEQTVKTHVSRILVKLGLRDRTQAAVFAYETGLVRPAGY

Nucleotide


Download         Length: 669 bp        

>NTDB_id=649422 OHB13_RS31430 WP_266851347.1 7048809..7049477(-) (vraR) [Streptomyces sp. NBC_00440]
ATGACCATCCGGGTACTGATCGCCGACGACCAGATGATGGTCCGTCAGGGCTTTACGGTGCTGCTCAACGCGGAGCCGGA
CATCGAGGTCGTCGGGCAGGCGGTCGACGGTCTCGACGCCATCGCCCGGGTCGCCGAACTCGCCCCGGACGTCGTCCTGA
TGGACATCCGGATGCCCGAACTCGGGGGCATCGAGGCCACCCGCCGGATCACCGGGCCCGGCGGTGCGGCGGTGCGGGTC
CTGGTGCTGACGACCTTCGATCTGGACGAGTACGTGTACGAGGCGCTCCGCGCGGGCGCGGCGGGGTTCCTTCTGAAGGA
CGCGTCGGCGGACGAACTCGCCCACGCCGTGCGGGTGGTGGCGGCCGGTGACGCGCTGCTGGCCCCGAACATCACCAAAC
GCCTCATCGCCGAGTTCTCCCGGGTGACCAACTCCCCCCGCACCGCCCCGAAGGGCCGGGCCGGCGATCTGACCGAGCGC
GAGACCGAGGTCCTCTCCCTCATCGCCCAGGGGCTGTCCAACGCGGAGATCGCCGGGCAGCTGGTGGTGGCGGAGCAGAC
CGTGAAGACCCATGTGAGCCGGATCCTGGTCAAGCTGGGCCTGCGCGACCGGACCCAGGCCGCGGTCTTCGCGTACGAGA
CGGGCCTGGTGCGCCCGGCCGGATACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.986

99.55

0.428
  degU Bacillus subtilis subsp. subtilis str. 168

41.518

100

0.419