Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB13_RS30450 Genome accession   NZ_CP107921
Coordinates   6846531..6847187 (-) Length   218 a.a.
NCBI ID   WP_328379201.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00440     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6841531..6852187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB13_RS30425 (OHB13_30415) - 6841861..6842307 (+) 447 WP_328379199.1 urease subunit beta -
  OHB13_RS30430 (OHB13_30420) ureC 6842307..6844031 (+) 1725 WP_328379200.1 urease subunit alpha -
  OHB13_RS30435 (OHB13_30425) - 6844109..6844795 (+) 687 WP_328380425.1 urease accessory UreF family protein -
  OHB13_RS30440 (OHB13_30430) ureG 6844909..6845586 (+) 678 WP_266860594.1 urease accessory protein UreG -
  OHB13_RS30445 (OHB13_30435) - 6845646..6846524 (+) 879 WP_328380426.1 urease accessory protein UreD -
  OHB13_RS30450 (OHB13_30440) vraR 6846531..6847187 (-) 657 WP_328379201.1 response regulator transcription factor Regulator
  OHB13_RS30455 (OHB13_30445) - 6847184..6847552 (-) 369 Protein_6005 ATP-binding protein -
  OHB13_RS30460 (OHB13_30450) - 6847945..6848763 (+) 819 WP_266851651.1 class I SAM-dependent methyltransferase -
  OHB13_RS30465 (OHB13_30455) - 6848750..6849454 (+) 705 WP_328379202.1 M24 family metallopeptidase -
  OHB13_RS30470 (OHB13_30460) - 6849563..6850360 (+) 798 WP_328379203.1 SAM-dependent methyltransferase -
  OHB13_RS30475 (OHB13_30465) - 6850416..6851432 (-) 1017 WP_328379204.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 22663.09 Da        Isoelectric Point: 6.6466

>NTDB_id=649420 OHB13_RS30450 WP_328379201.1 6846531..6847187(-) (vraR) [Streptomyces sp. NBC_00440]
MSTPSEVSGRVRIVVCDDHVVVRAGVLALLGSAPGIEVVGEAGTGEEAVTLAAGLVPDVVLMDLQLGAGIDGVETTRRIT
SAAVPPGGPHVLVLTTYDTDADITRAIEAGATGYLLKAVRPDELFDAIHAAAQGRTALSPPVASRVMARMRSPRPSLTPR
ELDILGQLAHGLGNRDIARALFISEATVKTHLGRIYSKLGVETRAGAVATAKEQRLIP

Nucleotide


Download         Length: 657 bp        

>NTDB_id=649420 OHB13_RS30450 WP_328379201.1 6846531..6847187(-) (vraR) [Streptomyces sp. NBC_00440]
GTGAGCACCCCGTCCGAGGTCTCGGGGCGGGTGCGGATCGTCGTCTGCGACGACCACGTCGTCGTCCGCGCGGGCGTGCT
CGCCCTGCTCGGCAGCGCCCCCGGCATCGAGGTGGTCGGCGAGGCCGGCACCGGGGAGGAGGCCGTGACGCTCGCCGCCG
GGCTGGTCCCCGATGTCGTCCTCATGGACCTCCAGCTGGGCGCGGGTATCGACGGCGTCGAGACCACCCGCCGCATCACG
TCCGCCGCGGTCCCCCCGGGCGGCCCGCATGTGCTGGTCCTCACCACGTACGACACGGACGCGGACATCACCCGGGCCAT
CGAGGCCGGCGCGACGGGTTATCTGCTGAAGGCCGTGCGCCCCGATGAACTCTTCGACGCCATCCACGCGGCAGCACAGG
GCCGCACCGCGCTCTCCCCTCCGGTCGCCAGCCGGGTGATGGCCCGGATGCGCAGCCCCCGGCCCTCGCTCACCCCCCGG
GAACTGGACATCCTCGGCCAGCTCGCCCACGGCCTCGGCAACCGCGACATCGCCCGTGCCCTGTTCATCAGCGAGGCGAC
CGTGAAGACCCATCTGGGCCGTATCTACAGCAAGCTGGGCGTCGAGACGCGGGCGGGGGCCGTCGCGACGGCGAAGGAGC
AGCGTCTCATTCCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.915

96.789

0.367
  degU Bacillus subtilis subsp. subtilis str. 168

35.586

100

0.362