Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   L2Z41_RS00875 Genome accession   NZ_CP091336
Coordinates   180639..181166 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain AB233-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 175639..186166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z41_RS00860 (L2Z41_00860) pilM 178192..179250 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  L2Z41_RS00865 (L2Z41_00865) pilN 179250..179891 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  L2Z41_RS00870 (L2Z41_00870) pilO 179888..180628 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  L2Z41_RS00875 (L2Z41_00875) pilP 180639..181166 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  L2Z41_RS00880 (L2Z41_00880) pilQ 181234..183399 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  L2Z41_RS00885 (L2Z41_00885) aroK 183411..183980 (+) 570 WP_000643712.1 shikimate kinase AroK -
  L2Z41_RS00890 (L2Z41_00890) aroB 184009..185091 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  L2Z41_RS00895 (L2Z41_00895) - 185107..185982 (+) 876 WP_000218802.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=649400 L2Z41_RS00875 WP_000695065.1 180639..181166(+) (pilP) [Acinetobacter baumannii strain AB233-VUB]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=649400 L2Z41_RS00875 WP_000695065.1 180639..181166(+) (pilP) [Acinetobacter baumannii strain AB233-VUB]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714