Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHB13_RS20880 Genome accession   NZ_CP107921
Coordinates   4636721..4638118 (-) Length   465 a.a.
NCBI ID   WP_266854640.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00440     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4631721..4643118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB13_RS20855 (OHB13_20850) - 4631984..4632535 (-) 552 WP_266854649.1 SigE family RNA polymerase sigma factor -
  OHB13_RS20860 (OHB13_20855) - 4632711..4633649 (-) 939 WP_328378113.1 A/G-specific adenine glycosylase -
  OHB13_RS20865 (OHB13_20860) - 4633744..4634352 (-) 609 WP_328378114.1 phosphatase PAP2 family protein -
  OHB13_RS20870 (OHB13_20865) - 4634536..4635390 (+) 855 WP_328380351.1 hypothetical protein -
  OHB13_RS20875 (OHB13_20870) disA 4635513..4636664 (-) 1152 WP_266854642.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHB13_RS20880 (OHB13_20875) radA/sms 4636721..4638118 (-) 1398 WP_266854640.1 DNA repair protein RadA Machinery gene
  OHB13_RS20885 (OHB13_20880) - 4638302..4640014 (+) 1713 WP_328378115.1 hypothetical protein -
  OHB13_RS20890 (OHB13_20885) - 4640181..4641026 (-) 846 WP_328378116.1 hypothetical protein -
  OHB13_RS20895 (OHB13_20890) - 4641115..4642047 (+) 933 WP_266854635.1 Ppx/GppA phosphatase family protein -
  OHB13_RS20900 (OHB13_20895) - 4642114..4642932 (+) 819 WP_266854633.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 48788.77 Da        Isoelectric Point: 7.7378

>NTDB_id=649397 OHB13_RS20880 WP_266854640.1 4636721..4638118(-) (radA/sms) [Streptomyces sp. NBC_00440]
MATRAKTRERPSYRCTECGYTTAKWLGRCPECQTWGTVEEQGGGPAVRTTAAGPVSSAAVPIGQVDSRTATARSTGVNEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGSDHRTLYVTAEESASQVRLRADRIHAINDHLYLAAETDLAAVL
GHLDAVKPSLLVLDSVQTVASSELDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVIEVADMGDALRALPRRSRARAPQDE

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=649397 OHB13_RS20880 WP_266854640.1 4636721..4638118(-) (radA/sms) [Streptomyces sp. NBC_00440]
ATGGCCACCCGTGCGAAGACCAGAGAACGGCCGTCCTACCGCTGCACCGAATGCGGGTACACGACGGCCAAGTGGCTGGG
CCGCTGCCCCGAGTGCCAGACGTGGGGGACGGTCGAGGAGCAGGGCGGCGGGCCCGCCGTGCGGACGACCGCGGCCGGTC
CGGTCAGCAGCGCCGCCGTCCCCATCGGCCAGGTCGACAGCCGGACGGCGACGGCCCGTTCGACCGGGGTCAACGAGCTG
GACCGGGTGCTCGGCGGCGGTCTGGTGCCCGGCGCGGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTCGACGTCGCGGCGAAGGCCGCCGGCTCCGACCACCGCACGCTCTATGTGACGGCCGAGGAGTCCGCGAGCCAGG
TCAGGCTGCGCGCCGACCGGATCCACGCGATCAATGACCACCTCTATCTGGCCGCCGAGACCGACCTCGCCGCGGTGCTC
GGCCACCTCGACGCGGTGAAGCCGTCCCTGCTGGTCCTGGACTCCGTACAGACGGTGGCCTCATCCGAACTGGACGGTGC
GCCGGGCGGTATGGCGCAGGTGCGCGAGGTGGCGGGCGCGCTGATCCGCGCATCCAAGGAGCGCGGGATGTCCACGCTGC
TCGTCGGGCACGTCACGAAGGACGGCGCCATCGCCGGGCCCCGGCTCCTTGAGCACCTGGTGGACGTCGTGCTGTCCTTC
GAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCGTCAAGAACAGATACGGGGCCACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACGCGCCGTGACGAACCGGTGCCCG
GGACCTGTCTGACGGTCACCCTGGAGGGCAAGCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCACAGATC
CCCTCACCCCGGCGCACCACCTCCGGTCTTGAGACCTCCCGGGTCTCGATGATGCTCGCCGTCCTCGAACAGCGCGGCAG
GATCAGCGCGCTCGGCAAGCGCGACATCTACACGGCGACGGTCGGCGGCGTGAAGCTCACCGAACCGGCCGCCGACCTGG
CCGTCGCGCTCGCCCTGGCCTCCGCCGCCAGCGACGTCCCGCTCCCGAAGAACCTGGTGGCGATCGGCGAAGTGGGTCTC
GCGGGCGAGGTCAGGAGGGTCACCGGCGTCCAGCGCAGGCTTGCCGAGGCCCACCGTCTCGGCTTCACCCACGCCCTCGT
ACCGACCGATCCGGGGAAGGTCCCCGCAGGGATGAAGGTCATCGAAGTGGCGGACATGGGGGACGCGCTGCGGGCCCTTC
CGCGCCGTTCAAGGGCCCGCGCGCCCCAGGACGAGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.297

97.849

0.424
  radA Streptococcus mitis SK321

41.41

97.634

0.404
  radA Streptococcus mitis NCTC 12261

41.41

97.634

0.404
  radA Streptococcus pneumoniae TIGR4

41.463

96.989

0.402
  radA Streptococcus pneumoniae R6

41.463

96.989

0.402
  radA Streptococcus pneumoniae Rx1

41.463

96.989

0.402
  radA Streptococcus pneumoniae D39

41.463

96.989

0.402