Detailed information    

insolico Bioinformatically predicted

Overview


Name   disA   Type   Machinery gene
Locus tag   OHB13_RS20875 Genome accession   NZ_CP107921
Coordinates   4635513..4636664 (-) Length   383 a.a.
NCBI ID   WP_266854642.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00440     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 4630513..4641664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB13_RS20845 (OHB13_20840) cseB 4630536..4631234 (-) 699 WP_328378111.1 two-component system response regulator CseB -
  OHB13_RS20850 (OHB13_20845) - 4631247..4631996 (-) 750 WP_328378112.1 hypothetical protein -
  OHB13_RS20855 (OHB13_20850) - 4631984..4632535 (-) 552 WP_266854649.1 SigE family RNA polymerase sigma factor -
  OHB13_RS20860 (OHB13_20855) - 4632711..4633649 (-) 939 WP_328378113.1 A/G-specific adenine glycosylase -
  OHB13_RS20865 (OHB13_20860) - 4633744..4634352 (-) 609 WP_328378114.1 phosphatase PAP2 family protein -
  OHB13_RS20870 (OHB13_20865) - 4634536..4635390 (+) 855 WP_328380351.1 hypothetical protein -
  OHB13_RS20875 (OHB13_20870) disA 4635513..4636664 (-) 1152 WP_266854642.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHB13_RS20880 (OHB13_20875) radA/sms 4636721..4638118 (-) 1398 WP_266854640.1 DNA repair protein RadA Machinery gene
  OHB13_RS20885 (OHB13_20880) - 4638302..4640014 (+) 1713 WP_328378115.1 hypothetical protein -
  OHB13_RS20890 (OHB13_20885) - 4640181..4641026 (-) 846 WP_328378116.1 hypothetical protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 41092.03 Da        Isoelectric Point: 5.1127

>NTDB_id=649396 OHB13_RS20875 WP_266854642.1 4635513..4636664(-) (disA) [Streptomyces sp. NBC_00440]
MAANDRAAPGRSGGSSSGNEALMRATLSAVAPGTALRDGLERILRGNTGGLIVLGMDKSVEAMCTGGFVMDVEFAATRLR
ELCKLDGALILDKDLTKILRAGVQLVPDASIPTEETGTRHRTADRVSKQCGFPVVSVSQSMHLIALYVDGERRVLEESAA
ILSRANQALATLERYKLRLDEVAGTLSALEIEDLVTVRDVTAVAQRLEMVRRIATEIAEYVVELGTDGRLLSLQLDELIA
GVEPERELVVRDYVPEPTSPRAASGRGPQRSRTVAEALVDLNTLSHTELLELPVVARALGYSGSPETLDSAVSPRGFRLL
AKVPRLPGAIIERLVEHFGGLQKLLAASVDDLQAVDGVGEARARSVREGLSRLAESSILERYV

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=649396 OHB13_RS20875 WP_266854642.1 4635513..4636664(-) (disA) [Streptomyces sp. NBC_00440]
GTGGCAGCCAATGACCGAGCAGCACCCGGGAGATCCGGCGGGAGCTCGTCCGGCAATGAAGCGCTGATGCGTGCCACGCT
GAGCGCTGTCGCGCCCGGTACCGCTCTGCGCGACGGCCTGGAGCGGATCCTCCGCGGGAACACCGGCGGCCTGATCGTCC
TGGGCATGGACAAGAGCGTCGAAGCGATGTGCACCGGCGGTTTCGTCATGGACGTGGAGTTCGCCGCGACCCGCCTGCGG
GAGCTGTGCAAGCTCGACGGCGCGCTGATCCTCGACAAGGATCTGACCAAGATTCTCCGGGCCGGCGTCCAGCTCGTCCC
GGACGCGTCGATCCCCACCGAGGAGACCGGCACCCGCCATCGCACGGCGGACCGGGTCTCCAAGCAGTGCGGCTTCCCCG
TCGTCTCCGTATCGCAGTCGATGCACCTGATCGCGCTGTACGTGGACGGGGAGCGCCGGGTCCTGGAGGAGTCGGCGGCG
ATCCTGTCCCGCGCCAACCAGGCCCTGGCCACGCTGGAGCGGTACAAGCTCCGGCTGGACGAGGTGGCGGGCACGCTCTC
CGCCCTGGAGATCGAGGACCTGGTGACGGTCCGGGACGTGACGGCTGTCGCGCAGCGTCTTGAGATGGTCCGGCGGATCG
CCACCGAGATCGCCGAGTACGTGGTGGAGCTGGGCACCGACGGCCGACTGCTCTCCCTCCAGCTGGACGAGCTGATCGCG
GGGGTCGAGCCGGAGCGGGAGCTGGTGGTCAGGGACTACGTGCCGGAGCCCACCTCCCCCAGAGCTGCCTCCGGGAGGGG
CCCCCAGCGTTCGCGTACGGTCGCCGAGGCGCTGGTCGACCTCAACACGCTCAGCCACACGGAGCTGCTCGAACTGCCCG
TGGTGGCAAGGGCGCTGGGGTACAGCGGCTCCCCGGAGACGCTCGACTCGGCGGTGTCGCCGCGCGGGTTCCGGCTGCTG
GCCAAGGTGCCGAGGCTGCCGGGGGCGATCATCGAACGGCTGGTGGAGCACTTCGGCGGGCTGCAGAAGCTGCTCGCCGC
CAGCGTGGATGATCTGCAGGCGGTGGACGGCGTCGGGGAGGCGCGGGCCCGTAGCGTCCGGGAAGGCCTTTCGCGGCTCG
CGGAGTCGTCGATTCTGGAGCGGTACGTCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  disA Bacillus subtilis subsp. subtilis str. 168

44.628

94.778

0.423