Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHR86_RS28525 Genome accession   NZ_CP107919
Coordinates   6253811..6254443 (-) Length   210 a.a.
NCBI ID   WP_328903355.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00441     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6248811..6259443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHR86_RS28505 (OHR86_28535) - 6249872..6250768 (+) 897 WP_328903351.1 sucrase ferredoxin -
  OHR86_RS28510 (OHR86_28540) aceB 6250835..6252454 (-) 1620 WP_328903352.1 malate synthase A -
  OHR86_RS28515 (OHR86_28545) - 6252687..6253280 (-) 594 WP_328903353.1 nucleotidyltransferase family protein -
  OHR86_RS28520 (OHR86_28550) - 6253466..6253780 (+) 315 WP_328903354.1 DUF5955 family protein -
  OHR86_RS28525 (OHR86_28555) vraR 6253811..6254443 (-) 633 WP_328903355.1 response regulator transcription factor Regulator
  OHR86_RS28530 (OHR86_28560) - 6254440..6255642 (-) 1203 WP_328903356.1 sensor histidine kinase -
  OHR86_RS28535 (OHR86_28565) - 6255753..6256826 (+) 1074 WP_328903357.1 ABC transporter permease -
  OHR86_RS28540 (OHR86_28570) - 6256823..6257503 (+) 681 WP_328903358.1 ABC transporter ATP-binding protein -
  OHR86_RS28545 (OHR86_28575) - 6257555..6258355 (-) 801 WP_328903359.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 21902.21 Da        Isoelectric Point: 7.4699

>NTDB_id=649350 OHR86_RS28525 WP_328903355.1 6253811..6254443(-) (vraR) [Streptomyces sp. NBC_00441]
MSGPVRLLLADDHPVVRAGLRAVLDTEPDFRVVAEAATAEEAVARAAGGGVDVVLMDLQFGAGMHGSQATAAITAAPDAP
RVLILTTYDSDADILAAVEAGAAGYLLKDTPPEELAAAVRTAAAGRSALAPAVAHRLMDRMRTPAQALTKRELEVLRLVG
EGLSNAEISKRLFLSQATVKSHLVHIYAKLGVDSRTAAVAAATARRLIRR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=649350 OHR86_RS28525 WP_328903355.1 6253811..6254443(-) (vraR) [Streptomyces sp. NBC_00441]
ATGAGCGGGCCCGTCCGGCTGCTGCTCGCCGACGACCATCCGGTGGTACGGGCGGGGCTGCGGGCCGTCCTGGACACCGA
GCCGGACTTCCGGGTCGTCGCGGAGGCCGCCACCGCCGAGGAGGCGGTCGCCCGGGCGGCCGGCGGCGGGGTGGACGTCG
TGCTGATGGACCTCCAGTTCGGCGCCGGGATGCACGGCTCGCAGGCGACCGCCGCGATCACGGCGGCACCGGACGCGCCC
CGGGTGCTGATCCTGACGACCTACGACAGCGACGCGGACATCCTGGCGGCGGTCGAGGCGGGGGCGGCGGGCTATCTGCT
GAAGGACACGCCGCCCGAGGAGCTGGCGGCCGCGGTCCGTACGGCGGCGGCCGGGCGCTCGGCGCTGGCCCCGGCCGTCG
CGCACCGGCTGATGGACCGCATGCGCACCCCCGCCCAGGCGCTCACCAAACGCGAGCTGGAAGTGCTGCGACTGGTCGGC
GAGGGGCTGTCGAACGCGGAGATCAGCAAGCGGCTGTTCCTCAGCCAGGCGACCGTGAAGTCCCACCTGGTGCACATCTA
CGCGAAGCTCGGCGTCGACTCGCGCACGGCGGCCGTGGCGGCGGCGACGGCCCGCAGGCTCATCCGCCGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(147-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

99.048

0.371
  degU Bacillus subtilis subsp. subtilis str. 168

34.862

100

0.362