Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHR86_RS13530 Genome accession   NZ_CP107919
Coordinates   3035109..3036521 (+) Length   470 a.a.
NCBI ID   WP_328900823.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00441     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3030109..3041521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHR86_RS13510 (OHR86_13525) - 3030325..3031137 (-) 813 WP_328904372.1 sugar phosphate isomerase/epimerase -
  OHR86_RS13515 (OHR86_13530) - 3031258..3032208 (-) 951 WP_328900820.1 Ppx/GppA phosphatase family protein -
  OHR86_RS13520 (OHR86_13535) - 3032250..3033122 (+) 873 WP_328900821.1 hypothetical protein -
  OHR86_RS13525 (OHR86_13540) - 3033136..3034974 (-) 1839 WP_328900822.1 hypothetical protein -
  OHR86_RS13530 (OHR86_13545) radA/sms 3035109..3036521 (+) 1413 WP_328900823.1 DNA repair protein RadA Machinery gene
  OHR86_RS13535 (OHR86_13550) disA 3036647..3037771 (+) 1125 WP_328900824.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHR86_RS13540 (OHR86_13555) - 3037800..3038567 (-) 768 WP_328904373.1 hypothetical protein -
  OHR86_RS13545 (OHR86_13560) - 3038901..3039803 (+) 903 WP_328900825.1 A/G-specific adenine glycosylase -
  OHR86_RS13550 (OHR86_13565) - 3040109..3040657 (+) 549 WP_018102282.1 SigE family RNA polymerase sigma factor -
  OHR86_RS13555 (OHR86_13570) - 3040645..3041370 (+) 726 WP_328900826.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49548.65 Da        Isoelectric Point: 8.0123

>NTDB_id=649312 OHR86_RS13530 WP_328900823.1 3035109..3036521(+) (radA/sms) [Streptomyces sp. NBC_00441]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARPTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDEHRTLYVTGEESASQVRMRADRIHAISDHLYLAAETDLSAV
LAHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAHRLGFTHALVPTDPGKVPAGMKVTEVADMGDALRALPRRTRAQAPREDDARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=649312 OHR86_RS13530 WP_328900823.1 3035109..3036521(+) (radA/sms) [Streptomyces sp. NBC_00441]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACCACCGCGAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTCCGGACCACGGCCGCGG
GGCGGGTCTCCACCGCCGCGCTGCCCATCGGCCAGGTGGACAGCCGGCAGGCCACCGCCCGGCCGACCGGCGTCGGCGAG
CTGGACCGGGTGCTGGGCGGCGGGCTGGTGCCCGGGGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCAC
GCTGCTGCTCGACGTCGCGGCGAAGGCGGCGACCGACGAGCACCGCACCCTCTATGTGACGGGCGAGGAGTCCGCGTCCC
AGGTCCGGATGCGGGCCGACCGCATCCATGCGATCAGCGACCACCTGTATCTGGCGGCGGAGACCGATCTGTCGGCGGTG
CTCGCCCACCTCGACGCGGTCAAGCCCTCGCTGCTGATCCTGGACTCGGTGCAGACCGTGGCCTCGCCGGAGATCGACGG
CGCGCCGGGCGGGATGGCGCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCGACGC
TGCTCGTGGGCCACGTCACCAAGGACGGCGCCATCGCGGGGCCCCGGCTCCTGGAGCACCTGGTGGACGTGGTGCTGTCG
TTCGAGGGCGACCGCCATGCCCGGCTGCGCCTGGTGCGCGGTATCAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGGATCACCGGGCTCGCCGATCCGTCCGGCCTGTTCCTCACGCGGCGCGACGAGCCGGTGC
CGGGCACCTGCCTGACCGTGACCCTGGAGGGCAAGCGGCCCCTGGTCGCGGAGGTGCAGGCGCTGACGGTGGACTCGCAG
ATCCCGTCCCCCCGGCGGACCACGTCGGGCCTGGAGACGTCCCGGGTGTCGATGATGCTCGCGGTCCTGGAGCAGCGCGG
CCGGATCAGCTCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGGGTGAAGCTGTCCGAGCCGGCCGCCGACC
TGGCGATCGCGCTGGCGCTGGCGAGCGCGGCGAGCGACACACCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGACGGGTCACGGGGGTGCAGCGCCGACTGTCCGAGGCGCACCGGCTGGGGTTCACGCACGCCTT
GGTCCCGACCGATCCGGGCAAGGTCCCGGCCGGTATGAAGGTGACGGAAGTCGCCGACATGGGCGACGCGCTCAGGGCGC
TCCCGCGCCGGACCCGCGCACAGGCCCCCCGGGAGGACGACGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(84-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.383

0.417
  radA Streptococcus pneumoniae Rx1

42.198

96.809

0.409
  radA Streptococcus pneumoniae D39

42.198

96.809

0.409
  radA Streptococcus pneumoniae R6

42.198

96.809

0.409
  radA Streptococcus pneumoniae TIGR4

42.198

96.809

0.409
  radA Streptococcus mitis SK321

43.823

91.277

0.4
  radA Streptococcus mitis NCTC 12261

43.59

91.277

0.398