Detailed information NTG0649302

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L2Z44_RS19290
• Genome accession: NZ_CP091333
• Coordinates: 3167996..3168856 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii strain DSM30011-VUB
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3162996..3173856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L2Z44_RS15185 (L2Z44_15185)	secG	3163601..3163930 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
L2Z44_RS15190 (L2Z44_15190)	tpiA	3163943..3164737 (-)	795	WP_029423716.1	triose-phosphate isomerase	-
L2Z44_RS15195 (L2Z44_15195)	pilB	3165028..3166740 (+)	1713	WP_075400770.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L2Z44_RS15200 (L2Z44_15200)	pilC	3166770..3167996 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
L2Z44_RS19290	pilD	3167996..3168856 (+)	861	WP_001152273.1	A24 family peptidase	Machinery gene
L2Z44_RS15215 (L2Z44_15215)	coaE	3168858..3169454 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
L2Z44_RS15220 (L2Z44_15220)	-	3169451..3170365 (-)	915	WP_000075011.1	DMT family transporter	-
L2Z44_RS15225 (L2Z44_15225)	rlmB	3170401..3171150 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
L2Z44_RS15230 (L2Z44_15230)	-	3171252..3171578 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
L2Z44_RS15235 (L2Z44_15235)	-	3171655..3172965 (-)	1311	WP_005112390.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=649302 L2Z44_RS19290 WP_001152273.1 3167996..3168856(+) (pilD) [Acinetobacter baumannii strain DSM30011-VUB]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=649302 L2Z44_RS19290 WP_001152273.1 3167996..3168856(+) (pilD) [Acinetobacter baumannii strain DSM30011-VUB]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441