Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHR86_RS08935 Genome accession   NZ_CP107919
Coordinates   2010202..2011248 (-) Length   348 a.a.
NCBI ID   WP_328900074.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00441     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2005202..2016248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHR86_RS08925 (OHR86_08935) rcrP 2006492..2008225 (+) 1734 WP_328900072.1 ABC transporter ATP-binding protein Regulator
  OHR86_RS08930 (OHR86_08940) rcrQ 2008225..2010156 (+) 1932 WP_328900073.1 ABC transporter ATP-binding protein Regulator
  OHR86_RS08935 (OHR86_08945) rpoS 2010202..2011248 (-) 1047 WP_328900074.1 RNA polymerase sigma factor Regulator
  OHR86_RS08940 (OHR86_08950) dnaG 2011563..2013470 (-) 1908 WP_328900075.1 DNA primase -
  OHR86_RS08945 (OHR86_08955) - 2013577..2014836 (-) 1260 WP_328900076.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 39229.84 Da        Isoelectric Point: 6.1995

>NTDB_id=649302 OHR86_RS08935 WP_328900074.1 2010202..2011248(-) (rpoS) [Streptomyces sp. NBC_00441]
MQTRTVTEAERAPAVPVQARAAHHPEGVMEEPDEPPEPRGRPEAAGPTSDLFRQYLREIGRIPLLTAADEVELARCVEAG
LFAEERLARTPDPDTRLAVDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARG
YKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAHLDLTPERVGEILRLAQEP
VSLHAPVGEEEDVSLGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTR
ERIRQIESRTLGRLRDHASADQLRGYLD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=649302 OHR86_RS08935 WP_328900074.1 2010202..2011248(-) (rpoS) [Streptomyces sp. NBC_00441]
GTGCAGACCCGGACCGTCACCGAAGCCGAGCGCGCCCCGGCCGTCCCCGTACAGGCCAGGGCGGCGCACCACCCCGAGGG
GGTCATGGAGGAGCCGGACGAGCCCCCGGAGCCGCGCGGGAGACCGGAGGCCGCCGGGCCCACCTCGGACCTGTTCCGCC
AGTACCTGCGCGAGATCGGGCGCATCCCGCTGCTCACCGCCGCCGACGAGGTGGAGCTCGCCCGGTGCGTCGAGGCCGGC
CTGTTCGCCGAGGAACGCCTCGCCCGCACCCCGGACCCCGACACCCGCCTGGCCGTCGACCTGGACCGGCTCGTCGTCAT
GGGCCGCATGGCCAAGCGCCGCCTCATCGAGGCCAACCTGCGCCTCGTCGTCTCCGTCGCCAAGCGCTACGTGGGCCGCG
GCCTGACCATGCTCGACCTCGTCCAGGAGGGGAACCTCGGGCTGATCCGCGCCGTCGAGAAGTTCGACTACGCGCGCGGC
TACAAGTTCTCGACGTACGCGACCTGGTGGATCCGGCAGGCCATGTCCCGCGCCCTCGCCGACCAGGCCCGGACCATAAG
GGTCCCGGTCCACGTCGTGGAGCTGATCAACCGCGTCGTCCGGGTCCAGCGCCGCATGCTCCAGGAACGCGGCTACGAGC
CCACCCCCGAGGAGGTCGCCGCCCACCTCGACCTGACGCCCGAACGGGTCGGCGAGATCCTGCGCCTGGCCCAGGAACCC
GTCTCGCTGCACGCCCCGGTCGGCGAGGAGGAGGACGTCTCGCTCGGCGACCTCATCGAGGACGGGGACGCCGCGTCCCC
CGTGGAGTCCGCCGCCTTCCTGCTGCTGCGCCAGCACCTGGAAGCGGTGCTCTCCACCCTGGGCGAGCGCGAACGCAAGG
TGGTCCAGCTGCGCTACGGGCTGGTCGACGGGCGGCCCCGCACCCTGGAGGAGATCGGCCGCATCTTCGGCGTGACGCGC
GAACGCATACGCCAGATCGAGTCCAGGACCCTCGGCAGACTGCGCGACCACGCCTCCGCCGACCAGCTCCGCGGCTACCT
CGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(115-184)

Sigma-70, region 4 (Sigma70_r4)

(283-335)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(50-83)

Sigma-70 region 3 (Sigma70_r3)

(194-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.197

84.483

0.365