Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHR86_RS08930 Genome accession   NZ_CP107919
Coordinates   2008225..2010156 (+) Length   643 a.a.
NCBI ID   WP_328900073.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00441     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2003225..2015156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHR86_RS08915 (OHR86_08925) - 2004536..2004841 (+) 306 WP_328904313.1 YtxH domain-containing protein -
  OHR86_RS08920 (OHR86_08930) - 2004911..2006356 (+) 1446 WP_328900071.1 FGGY family carbohydrate kinase -
  OHR86_RS08925 (OHR86_08935) rcrP 2006492..2008225 (+) 1734 WP_328900072.1 ABC transporter ATP-binding protein Regulator
  OHR86_RS08930 (OHR86_08940) rcrQ 2008225..2010156 (+) 1932 WP_328900073.1 ABC transporter ATP-binding protein Regulator
  OHR86_RS08935 (OHR86_08945) rpoS 2010202..2011248 (-) 1047 WP_328900074.1 RNA polymerase sigma factor Regulator
  OHR86_RS08940 (OHR86_08950) dnaG 2011563..2013470 (-) 1908 WP_328900075.1 DNA primase -
  OHR86_RS08945 (OHR86_08955) - 2013577..2014836 (-) 1260 WP_328900076.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69196.62 Da        Isoelectric Point: 5.4158

>NTDB_id=649301 OHR86_RS08930 WP_328900073.1 2008225..2010156(+) (rcrQ) [Streptomyces sp. NBC_00441]
MAGPGGRMMAGGAPTERSMDFKGSSKRLLKRFAVEKNTLYMMLVAVAFSVGLSVVGPKILGKATDLVFAGVVGRSMDAGT
TKEQAVEGLRRSNSGLADMLSGVDFTPGQGIDFGAVGDILVMALAVYVGAGLLMLVSTRLSIRIINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQQESAKDFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPAKGEGEHPGILRGSVAL
EHVSFRYDPEKPLIEDLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIARMSRADLRSGIGMVLQD
TWLFGGTIAENIAYGASGDVGRERIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMAGLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLDAKGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=649301 OHR86_RS08930 WP_328900073.1 2008225..2010156(+) (rcrQ) [Streptomyces sp. NBC_00441]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGAGCGGTCCATGGACTTCAAGGGGTCCTCGAAGCG
GCTGCTGAAGCGCTTCGCCGTCGAGAAGAACACCCTGTACATGATGCTGGTCGCGGTCGCGTTCAGCGTCGGGCTCTCCG
TGGTCGGACCGAAGATCCTCGGCAAGGCGACCGACCTGGTCTTCGCCGGGGTCGTCGGCCGGTCCATGGACGCGGGGACG
ACCAAGGAACAGGCCGTCGAGGGCCTGCGCAGGAGCAACAGCGGCCTGGCCGACATGCTGTCCGGGGTGGACTTCACGCC
GGGGCAGGGCATCGACTTCGGCGCGGTCGGCGACATCCTGGTGATGGCGCTCGCGGTGTACGTCGGCGCGGGGCTGCTGA
TGCTGGTGTCGACGCGGCTGTCGATCCGGATCATCAACCGGGTGGTGTTCCAGCTCCGTGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTCTCGTACTTCGACCGCGCCAAGCGCGGCGAGGTGCTGAGCCGGGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTGACGATCGTCGGCGTGCTGGTGATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGGTGGTCGTGGCGACGAAAGTCGGCAAGCGC
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGCCACAC
CCTGGTGAAGGTCTTCGGCCGGCAGCAGGAGTCCGCGAAGGACTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGATCGCCGTG
GTCGGCGGGCTCCGGGTCGCGTCCGGCTCGCTGTCGATCGGTGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACCCAGGTCGCCTCGATGGCCAACCTGGTGCAGTCCGGTGTCGCCTCGGCGGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGAGGCCGACCCGGCGAAGGGCGAGGGCGAGCACCCCGGCATCCTGCGCGGCAGCGTCGCGCTG
GAGCACGTGTCATTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGAACGTCGAACCGGGCCACACGGT
CGCGATCGTCGGCCCGACGGGCGCCGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCC
GGATCACGCTGGACGGCGTGGACATCGCGAGGATGTCCCGGGCGGACCTGCGTTCGGGCATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCCTACGGGGCCTCCGGCGACGTCGGCCGGGAGCGCATCGAGGA
GGCTGCGCGGGCGGCCCACGCCGACCGCTTCATCCGGACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCT
CCGGGGTCAGCGCGGGCGAGAAGCAGCTGATCACGATCGCCCGGGCGTTCCTGTCCGACCCGGTGATACTCGTGCTGGAC
GAGGCGACCAGCTCCGTCGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGGGCCTGGCGCACGGCCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGACGCCGACGTCATCCTGGTCATGGAGAACGGCTCGATCGTGGAGC
AGGGCACGCACGACGAACTGCTGGACGCGAAGGGTGCCTACGCCCGGCTGTACGCGGCGCAGTTCGCCCAGGCGGTCGCC
GAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(58-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.444

82.582

0.367