Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHR86_RS08925 Genome accession   NZ_CP107919
Coordinates   2006492..2008225 (+) Length   577 a.a.
NCBI ID   WP_328900072.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00441     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2001492..2013225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHR86_RS08890 (OHR86_08900) - 2002197..2002499 (-) 303 WP_328900069.1 transposase -
  OHR86_RS08895 (OHR86_08905) - 2002698..2003633 (+) 936 WP_328900070.1 alpha/beta hydrolase -
  OHR86_RS08915 (OHR86_08925) - 2004536..2004841 (+) 306 WP_328904313.1 YtxH domain-containing protein -
  OHR86_RS08920 (OHR86_08930) - 2004911..2006356 (+) 1446 WP_328900071.1 FGGY family carbohydrate kinase -
  OHR86_RS08925 (OHR86_08935) rcrP 2006492..2008225 (+) 1734 WP_328900072.1 ABC transporter ATP-binding protein Regulator
  OHR86_RS08930 (OHR86_08940) rcrQ 2008225..2010156 (+) 1932 WP_328900073.1 ABC transporter ATP-binding protein Regulator
  OHR86_RS08935 (OHR86_08945) rpoS 2010202..2011248 (-) 1047 WP_328900074.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62638.69 Da        Isoelectric Point: 5.2524

>NTDB_id=649300 OHR86_RS08925 WP_328900072.1 2006492..2008225(+) (rcrP) [Streptomyces sp. NBC_00441]
MLIKLLRAYLGPYKKPIAVLVVFQLLQTCATLYLPTLNADIIDNGVVTGDTGYILQYGGVMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSSREVGRFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGISVSLIVRKMRPLFRQMQKRLDTVNRVLREQITGNRVIRAFVRDGYEEGRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVEPVRELQAHGHLEVRGADFRYPGAEEPVLRAVELVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVSTIREADRIIVLDEGRVVGTGTHHELMDGN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=649300 OHR86_RS08925 WP_328900072.1 2006492..2008225(+) (rcrP) [Streptomyces sp. NBC_00441]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAAGAAACCGATCGCGGTGCTGGTCGTCTTCCAGCTGCTGCA
GACCTGCGCCACGCTCTACCTGCCGACCCTCAACGCCGACATCATCGACAACGGTGTCGTGACGGGGGACACGGGTTACA
TCCTCCAGTACGGCGGCGTGATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGCGCC
CGCACCGCGTCCGCGCTCGGGCGGGACGTGCGGGCGTCCGTCTTCGACCGGGTGCAGTCCTTCTCCTCGCGCGAGGTCGG
GCGGTTCGGCGCCCCGTCGCTCATCACCCGTACGACCAATGACGTCCAGCAGATACAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTGGGCCAGGACGTGCCGCTCTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGGATCTCGGTCAGCCTGATCGTGCGGAAGATGCGCCCGCTGTTCCGGCAGATGCA
GAAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCGTTCGTGCGCGACG
GCTACGAGGAGGGGCGCTTCCGGGGTGCCAACACCGAGCTGACGGACGTGGCGCTGTCGACGGGCCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGACCGTCGTGAACGTGTCGTCCATCGCGGTGGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCGACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACGGAGTCCAGCGTCGTCCCG
CCGGTCGAGCCGGTGCGCGAGTTGCAGGCTCACGGGCACCTGGAGGTGCGCGGCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGGCGGTGGAGCTGGTGGCGCGGCCGGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCCCGGCTGTTCGACGTGACGGACGGCCAGGTGCTGGTCGACGGGACCGATGTGCGG
ACGCTGGACCCGGTGCTGCTGGCGAAGACGGTGAGCCTGGTCCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTCGCGAC
GAACCTGCGGTACGGGAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCCCAGGCGAAGGAGTTCG
TGGAAGCCCTGGAGCACGGGCTCGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGCCAGCGGCTC
TCGATCGCGCGGACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTCGGGCGGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTCTCCACCATCC
GGGAGGCCGACCGGATCATCGTGCTGGACGAGGGGCGGGTCGTCGGGACCGGTACCCATCACGAGCTGATGGACGGCAAT
GACACATACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.894

97.747

0.39