Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   L2Z44_RS19035 Genome accession   NZ_CP091333
Coordinates   3963670..3964305 (-) Length   211 a.a.
NCBI ID   WP_075399905.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3958670..3969305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS19000 (L2Z44_19000) mlaE 3959007..3959783 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  L2Z44_RS19005 (L2Z44_19005) - 3959783..3960463 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  L2Z44_RS19010 (L2Z44_19010) - 3960490..3961131 (+) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  L2Z44_RS19015 (L2Z44_19015) - 3961143..3961430 (+) 288 WP_000250997.1 STAS domain-containing protein -
  L2Z44_RS19020 (L2Z44_19020) - 3961500..3962513 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  L2Z44_RS19025 (L2Z44_19025) - 3962671..3963251 (+) 581 Protein_3712 TIGR00730 family Rossman fold protein -
  L2Z44_RS19030 (L2Z44_19030) - 3963266..3963667 (+) 402 WP_000849706.1 NUDIX domain-containing protein -
  L2Z44_RS19035 (L2Z44_19035) comF 3963670..3964305 (-) 636 WP_075399905.1 phosphoribosyltransferase family protein Machinery gene
  L2Z44_RS19040 (L2Z44_19040) recG 3964298..3966343 (-) 2046 WP_072688915.1 ATP-dependent DNA helicase RecG -
  L2Z44_RS19045 (L2Z44_19045) - 3966364..3967179 (+) 816 WP_000547774.1 NAD(P)H-binding protein -
  L2Z44_RS19050 (L2Z44_19050) adeT2 3967259..3968245 (+) 987 WP_075399906.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24571.74 Da        Isoelectric Point: 9.7140

>NTDB_id=649300 L2Z44_RS19035 WP_075399905.1 3963670..3964305(-) (comF) [Acinetobacter baumannii strain DSM30011-VUB]
MFKFLTPQYLFHLLSPCLLCEIGTREKYPLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=649300 L2Z44_RS19035 WP_075399905.1 3963670..3964305(-) (comF) [Acinetobacter baumannii strain DSM30011-VUB]
ATGTTTAAGTTTTTAACCCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATCCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGACCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

98.578

100

0.986
  comF Acinetobacter baumannii D1279779

97.63

100

0.976