Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   L2Z44_RS18540 Genome accession   NZ_CP091333
Coordinates   3859402..3859929 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3854402..3864929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS18525 (L2Z44_18525) pilM 3856955..3858013 (+) 1059 WP_004644147.1 pilus assembly protein PilM Machinery gene
  L2Z44_RS18530 (L2Z44_18530) pilN 3858013..3858654 (+) 642 WP_004839795.1 PilN domain-containing protein Machinery gene
  L2Z44_RS18535 (L2Z44_18535) pilO 3858651..3859391 (+) 741 WP_002048088.1 type 4a pilus biogenesis protein PilO Machinery gene
  L2Z44_RS18540 (L2Z44_18540) pilP 3859402..3859929 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  L2Z44_RS18545 (L2Z44_18545) pilQ 3859997..3862162 (+) 2166 WP_075399883.1 type IV pilus secretin PilQ family protein Machinery gene
  L2Z44_RS18550 (L2Z44_18550) aroK 3862174..3862743 (+) 570 WP_000643712.1 shikimate kinase AroK -
  L2Z44_RS18555 (L2Z44_18555) aroB 3862772..3863854 (+) 1083 WP_075399884.1 3-dehydroquinate synthase -
  L2Z44_RS18560 (L2Z44_18560) - 3863870..3864745 (+) 876 WP_000218800.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=649290 L2Z44_RS18540 WP_000695065.1 3859402..3859929(+) (pilP) [Acinetobacter baumannii strain DSM30011-VUB]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=649290 L2Z44_RS18540 WP_000695065.1 3859402..3859929(+) (pilP) [Acinetobacter baumannii strain DSM30011-VUB]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714