Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   L2Z44_RS18530 Genome accession   NZ_CP091333
Coordinates   3858013..3858654 (+) Length   213 a.a.
NCBI ID   WP_004839795.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3853013..3863654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS18510 (L2Z44_18510) - 3853061..3853393 (+) 333 WP_000169602.1 hypothetical protein -
  L2Z44_RS18515 (L2Z44_18515) - 3853396..3854220 (+) 825 WP_102891621.1 putative RNA methyltransferase -
  L2Z44_RS18520 (L2Z44_18520) ponA 3854238..3856793 (-) 2556 WP_005109330.1 penicillin-binding protein PBP1a -
  L2Z44_RS18525 (L2Z44_18525) pilM 3856955..3858013 (+) 1059 WP_004644147.1 pilus assembly protein PilM Machinery gene
  L2Z44_RS18530 (L2Z44_18530) pilN 3858013..3858654 (+) 642 WP_004839795.1 PilN domain-containing protein Machinery gene
  L2Z44_RS18535 (L2Z44_18535) pilO 3858651..3859391 (+) 741 WP_002048088.1 type 4a pilus biogenesis protein PilO Machinery gene
  L2Z44_RS18540 (L2Z44_18540) pilP 3859402..3859929 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  L2Z44_RS18545 (L2Z44_18545) pilQ 3859997..3862162 (+) 2166 WP_075399883.1 type IV pilus secretin PilQ family protein Machinery gene
  L2Z44_RS18550 (L2Z44_18550) aroK 3862174..3862743 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24035.35 Da        Isoelectric Point: 5.3968

>NTDB_id=649288 L2Z44_RS18530 WP_004839795.1 3858013..3858654(+) (pilN) [Acinetobacter baumannii strain DSM30011-VUB]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKYSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=649288 L2Z44_RS18530 WP_004839795.1 3858013..3858654(+) (pilN) [Acinetobacter baumannii strain DSM30011-VUB]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGGTGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATATAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704