Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   L2Z44_RS15955 Genome accession   NZ_CP091333
Coordinates   3320007..3321161 (+) Length   384 a.a.
NCBI ID   WP_005112499.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3315007..3326161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS15930 (L2Z44_15930) - 3315194..3316408 (+) 1215 WP_075400791.1 oxygenase MpaB family protein -
  L2Z44_RS15935 (L2Z44_15935) - 3316478..3316684 (-) 207 WP_000182542.1 hypothetical protein -
  L2Z44_RS15940 (L2Z44_15940) - 3316738..3318816 (-) 2079 WP_075400792.1 TonB-dependent copper receptor -
  L2Z44_RS15945 (L2Z44_15945) - 3318889..3319317 (-) 429 WP_000231981.1 DUF2946 family protein -
  L2Z44_RS15950 (L2Z44_15950) def 3319354..3319884 (-) 531 WP_001196539.1 peptide deformylase -
  L2Z44_RS15955 (L2Z44_15955) tsaP 3320007..3321161 (+) 1155 WP_005112499.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  L2Z44_RS15960 (L2Z44_15960) dprA 3321182..3322312 (+) 1131 WP_031945614.1 DNA-processing protein DprA Machinery gene
  L2Z44_RS15965 (L2Z44_15965) - 3322363..3322932 (+) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  L2Z44_RS15970 (L2Z44_15970) - 3323324..3324244 (-) 921 WP_102891857.1 DMT family transporter -
  L2Z44_RS15975 (L2Z44_15975) - 3324350..3325000 (-) 651 WP_085940599.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42346.24 Da        Isoelectric Point: 8.2524

>NTDB_id=649282 L2Z44_RS15955 WP_005112499.1 3320007..3321161(+) (tsaP) [Acinetobacter baumannii strain DSM30011-VUB]
MKKVFDGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTHLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYVVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=649282 L2Z44_RS15955 WP_005112499.1 3320007..3321161(+) (tsaP) [Acinetobacter baumannii strain DSM30011-VUB]
ATGAAAAAGGTTTTTGACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATACGTTGTGAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGTTACACTGGGCAAACCACTCACT
TACAACCACAAGTTCGCGTAGAAGCATTAAATAATAGCGTTCCTGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATGTGGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCCGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACACTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGTGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAGGGCGTTCAAGTAGGACAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTGATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.958

100

0.99