Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG432_RS27675 Genome accession   NZ_CP107918
Coordinates   6173567..6174211 (+) Length   214 a.a.
NCBI ID   WP_328313680.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00442     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6168567..6179211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG432_RS27655 (OG432_27655) - 6169394..6170056 (-) 663 WP_328313676.1 transglycosylase SLT domain-containing protein -
  OG432_RS27660 (OG432_27660) - 6170326..6171405 (-) 1080 WP_328313677.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG432_RS27665 (OG432_27665) - 6171402..6172184 (-) 783 WP_328313678.1 SDR family oxidoreductase -
  OG432_RS27670 (OG432_27670) - 6172390..6173574 (+) 1185 WP_328313679.1 GAF domain-containing sensor histidine kinase -
  OG432_RS27675 (OG432_27675) vraR 6173567..6174211 (+) 645 WP_328313680.1 response regulator transcription factor Regulator
  OG432_RS27680 (OG432_27680) - 6174425..6174667 (+) 243 WP_328313681.1 chaplin -
  OG432_RS27685 (OG432_27685) - 6175056..6175847 (-) 792 WP_328313682.1 hypothetical protein -
  OG432_RS27690 (OG432_27690) - 6175998..6176789 (+) 792 WP_328313683.1 ABC transporter ATP-binding protein -
  OG432_RS27695 (OG432_27695) - 6176915..6177346 (+) 432 WP_328315265.1 NfeD family protein -
  OG432_RS27700 (OG432_27700) - 6177427..6178377 (+) 951 WP_328313684.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23103.47 Da        Isoelectric Point: 6.1571

>NTDB_id=649272 OG432_RS27675 WP_328313680.1 6173567..6174211(+) (vraR) [Streptomyces sp. NBC_00442]
MADKVIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVARAEELRPDVVLMDVKMPGMDGIEALRKLRELANPA
KVLIVTSFTEQRTVVPALRGGASGYVYKDVDPEALAGAIRSVHAGHVLLQPEVAGALLSQDDGHGGTGRGTTLTEREKEV
LALIADGRSNREIARHLVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVTG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=649272 OG432_RS27675 WP_328313680.1 6173567..6174211(+) (vraR) [Streptomyces sp. NBC_00442]
GTGGCTGACAAGGTGATCCGGGTCCTGCTCGTGGACGACCACCAGGTGGTCCGCCGCGGACTGCGTACGTTCCTGGAAGT
TCAGGACGACATAGAGGTGGTGGGGGAGGCGTCCGACGGCGCCGAGGGCGTGGCCCGCGCCGAGGAGCTGAGGCCGGACG
TCGTCCTGATGGACGTGAAGATGCCGGGCATGGACGGCATCGAGGCCCTGCGCAAGCTCCGCGAACTCGCTAACCCGGCG
AAGGTCCTCATCGTCACCAGCTTCACCGAGCAGCGCACGGTCGTTCCCGCCCTGCGCGGCGGTGCGTCCGGCTACGTATA
CAAGGACGTCGACCCGGAGGCGCTGGCCGGAGCGATCCGCTCGGTGCACGCCGGGCACGTGCTGCTCCAGCCGGAGGTCG
CGGGCGCCCTGCTCAGCCAGGACGACGGCCACGGCGGCACCGGGCGCGGCACGACCCTGACCGAGCGGGAGAAGGAGGTC
CTGGCCCTGATCGCCGACGGCCGCTCCAACCGGGAGATCGCCCGCCACCTCGTCCTGTCCGAGAAGACGGTCAAGACCCA
CGTCTCGAACATCCTGATGAAGCTGGACCTCGCCGACCGCACCCAGGCCGCGCTCTGGGCGGTGCGGCACGGCGTGACCG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.444

96.729

0.43
  degU Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.397