Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG432_RS14085 Genome accession   NZ_CP107918
Coordinates   3129184..3130581 (+) Length   465 a.a.
NCBI ID   WP_328311282.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00442     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3124184..3135581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG432_RS14065 (OG432_14070) - 3124470..3125291 (-) 822 WP_328311279.1 sugar phosphate isomerase/epimerase -
  OG432_RS14070 (OG432_14075) - 3125418..3126350 (-) 933 WP_328311280.1 Ppx/GppA phosphatase family protein -
  OG432_RS14075 (OG432_14080) - 3126484..3127218 (+) 735 WP_328315100.1 hypothetical protein -
  OG432_RS14080 (OG432_14085) - 3127243..3128916 (-) 1674 WP_328311281.1 hypothetical protein -
  OG432_RS14085 (OG432_14090) radA/sms 3129184..3130581 (+) 1398 WP_328311282.1 DNA repair protein RadA Machinery gene
  OG432_RS14090 (OG432_14095) disA 3130683..3131807 (+) 1125 WP_267058701.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG432_RS14095 (OG432_14100) - 3132041..3132898 (-) 858 WP_328311283.1 hypothetical protein -
  OG432_RS14100 (OG432_14105) - 3133132..3133758 (+) 627 WP_328311284.1 phosphatase PAP2 family protein -
  OG432_RS14105 (OG432_14110) - 3133811..3134743 (+) 933 WP_328311285.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 48924.02 Da        Isoelectric Point: 8.0021

>NTDB_id=649243 OG432_RS14085 WP_328311282.1 3129184..3130581(+) (radA/sms) [Streptomyces sp. NBC_00442]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAALPIGEVDGRQATARTTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYITGEESASQVRLRADRIKALNDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDVAVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVADMGDALRVLPRGRRAQAPREE

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=649243 OG432_RS14085 WP_328311282.1 3129184..3130581(+) (radA/sms) [Streptomyces sp. NBC_00442]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACCACCGCCAAGTGGCT
CGGCCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGCACCACGGCGGCCGGCC
GGGTCTCCACCGCCGCGCTGCCCATCGGCGAGGTCGACGGCCGGCAGGCGACCGCCCGCACCACCGGCGTCGCCGAGCTC
GACCGGGTGCTCGGCGGCGGCCTCGTGCCCGGCGCGGTCGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
GCTCCTGGACGTGGCGGCCAAGGCGGCGAGCGACGACCACCGCACCCTCTACATCACGGGCGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAAGCCCTCAACGACCACCTCTATCTGGCCGCCGAGACCGACCTGTCCGCGGTCCTG
GGCCACCTCGACGCGGTGAAGCCGTCCCTGCTCGTCCTCGACTCCGTACAGACCGTCGCCTCGCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTGC
TCGTCGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCCCGTCTCCTGGAGCACCTGGTGGACGTGGTGCTGTCCTTC
GAGGGCGACCGGCACGCGCGCCTGCGTCTCGTACGGGGCGTCAAGAACCGTTACGGGGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGACTCACCGATCCCAGCGGCCTGTTCCTGACCCGGCGCGACGTCGCGGTGCCGG
GCACCTGCCTCACCGTCACGTTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCGCAGATC
CCGTCCCCGCGCCGCACCACCTCGGGCCTGGAGACCTCCCGTGTCTCGATGATGCTCGCCGTGCTCGAACAGCGGGGCCG
GATCACGGCGCTCGGCAAACGCGACATCTACAGCGCGACGGTGGGCGGCGTGAAGCTCTCCGAGCCCGCGGCCGACCTCG
CGATCGCCCTCGCGCTCGCCTCCGCGGCCAGCGACACTCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAAGTCGGCCTC
GCGGGCGAGGTCAGAAGGGTCACCGGGGTGCAGCGCAGGCTCGCCGAGGCGCACCGTCTGGGCTTCACCCACGCCCTGGT
GCCGACCGACCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGGGACGCGCTGCGGGTGCTGC
CACGCGGGCGTCGCGCACAGGCCCCACGGGAGGAGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(82-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.592

97.419

0.434
  radA Streptococcus mitis SK321

43.925

92.043

0.404
  radA Streptococcus pneumoniae Rx1

43.925

92.043

0.404
  radA Streptococcus pneumoniae D39

43.925

92.043

0.404
  radA Streptococcus pneumoniae R6

43.925

92.043

0.404
  radA Streptococcus pneumoniae TIGR4

43.925

92.043

0.404
  radA Streptococcus mitis NCTC 12261

43.925

92.043

0.404