Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG432_RS06760 Genome accession   NZ_CP107918
Coordinates   1527623..1528288 (-) Length   221 a.a.
NCBI ID   WP_328308737.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00442     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1522623..1533288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG432_RS06735 (OG432_06735) - 1522718..1523539 (-) 822 WP_328308728.1 ABC transporter permease -
  OG432_RS06740 (OG432_06740) - 1523616..1524431 (-) 816 WP_328308729.1 ABC transporter ATP-binding protein -
  OG432_RS06745 (OG432_06745) - 1524632..1525315 (+) 684 WP_328308731.1 response regulator -
  OG432_RS06750 (OG432_06750) - 1525365..1526963 (-) 1599 WP_328308733.1 cation acetate symporter -
  OG432_RS06755 (OG432_06755) - 1526960..1527505 (-) 546 WP_328308735.1 DUF485 domain-containing protein -
  OG432_RS06760 (OG432_06760) vraR 1527623..1528288 (-) 666 WP_328308737.1 response regulator transcription factor Regulator
  OG432_RS06765 (OG432_06765) - 1528315..1529505 (-) 1191 WP_328308739.1 histidine kinase -
  OG432_RS06770 (OG432_06770) - 1529502..1530017 (-) 516 WP_328308741.1 DUF1453 domain-containing protein -
  OG432_RS06775 (OG432_06775) - 1530233..1532350 (-) 2118 WP_328308743.1 DNA topoisomerase IV subunit B -
  OG432_RS06780 (OG432_06780) - 1532784..1533014 (+) 231 WP_328308744.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23591.09 Da        Isoelectric Point: 5.1392

>NTDB_id=649218 OG432_RS06760 WP_328308737.1 1527623..1528288(-) (vraR) [Streptomyces sp. NBC_00442]
MIKVVVADDQSVVREGIVMLLGLLPGIEVIGSARDGEEAVALTARLAPDIVLMDLRMPRCDGVEATRRIRAEHPGTEVVI
LTTYADDDSLFPALKAGARGYLTKDAGGEEIVKSIEDVLSGQAGLAPSIQRRLLERVTAQPPAPTPGELPDGLTTREGEV
LGLVAEGMTNPEISKALHISTATVKTHINNIFGKCGVRDRAQAVRYAYRNGWADPPGRPLP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=649218 OG432_RS06760 WP_328308737.1 1527623..1528288(-) (vraR) [Streptomyces sp. NBC_00442]
GTGATCAAGGTGGTCGTGGCCGACGACCAGTCCGTGGTGCGCGAAGGCATCGTGATGCTGCTCGGGCTGCTGCCGGGTAT
CGAGGTCATCGGCTCGGCGCGAGACGGCGAGGAGGCCGTCGCCCTCACGGCCCGACTGGCCCCGGACATCGTCCTGATGG
ACCTGCGCATGCCGCGTTGCGACGGGGTGGAGGCCACCCGCCGCATCCGCGCCGAGCACCCCGGCACCGAGGTGGTGATC
CTCACGACGTATGCGGACGACGACTCCCTCTTCCCTGCCCTGAAGGCCGGCGCCCGGGGGTATCTGACCAAGGACGCCGG
GGGCGAGGAGATCGTCAAGTCGATAGAGGACGTGCTGTCCGGTCAGGCCGGCCTCGCCCCGTCCATCCAGCGCCGCCTCC
TGGAACGGGTGACGGCACAGCCGCCGGCCCCCACTCCGGGCGAACTGCCCGACGGGCTCACCACTCGCGAGGGCGAAGTG
CTCGGGCTCGTCGCGGAGGGAATGACCAACCCCGAGATCTCCAAGGCCCTGCACATCTCGACGGCCACCGTGAAGACCCA
CATCAACAACATCTTCGGCAAGTGCGGGGTACGCGACCGGGCCCAGGCCGTGCGGTACGCCTATCGGAACGGATGGGCCG
ATCCGCCCGGCAGACCGCTTCCGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.389

95.475

0.367
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.367