Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHO27_RS36410 Genome accession   NZ_CP107917
Coordinates   7993313..7993975 (-) Length   220 a.a.
NCBI ID   WP_328429185.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00443     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7988313..7998975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO27_RS36390 (OHO27_36375) - 7989047..7989877 (-) 831 WP_328429181.1 alpha/beta hydrolase -
  OHO27_RS36395 (OHO27_36380) - 7990082..7990966 (+) 885 WP_328429182.1 RNA polymerase sigma-70 factor -
  OHO27_RS36400 (OHO27_36385) - 7991138..7991899 (+) 762 WP_328429183.1 GntR family transcriptional regulator -
  OHO27_RS36405 (OHO27_36390) - 7992024..7993181 (-) 1158 WP_328429184.1 ROK family protein -
  OHO27_RS36410 (OHO27_36395) vraR 7993313..7993975 (-) 663 WP_328429185.1 response regulator transcription factor Regulator
  OHO27_RS36415 (OHO27_36400) - 7993990..7995159 (-) 1170 WP_328429186.1 histidine kinase -
  OHO27_RS36420 (OHO27_36405) - 7995269..7996198 (+) 930 WP_328429187.1 ABC transporter ATP-binding protein -
  OHO27_RS36425 (OHO27_36410) - 7996202..7996926 (+) 725 Protein_7195 ABC transporter permease -
  OHO27_RS36430 (OHO27_36415) - 7996968..7997396 (+) 429 WP_328429188.1 hypothetical protein -
  OHO27_RS36435 (OHO27_36420) mug 7997430..7997978 (-) 549 WP_328429189.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23621.25 Da        Isoelectric Point: 5.0025

>NTDB_id=649201 OHO27_RS36410 WP_328429185.1 7993313..7993975(-) (vraR) [Streptomyces sp. NBC_00443]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRQLRPDVIAMDVRMPLLDGIEATRAVLRTVDDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAARYGDDGGNRAARAVLERARLTER
EAEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=649201 OHO27_RS36410 WP_328429185.1 7993313..7993975(-) (vraR) [Streptomyces sp. NBC_00443]
ATGCCGGTCACCGTTCTCCTCGTCGACGACGAACCCCTCGTACGCGCGGGTCTGCGGGCCGTGTTGGAGGCGCAGCCCGA
CATCGAGGTCGTCGGGGAGGCCGCGGACGGCGCGGCGGTGATCCCGCTGGTGCGTCAGCTGCGGCCCGACGTGATCGCCA
TGGATGTACGGATGCCGCTGCTGGACGGGATCGAGGCCACGCGCGCGGTGCTGCGCACGGTCGACGATCCGCCGAAGATC
CTTGTCGTCACGACCTTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGGGCCGGTGCCGACGGGTTCCTGCTGAAGCG
GGCCCGGCCTGCCGAGATCGTGCACGCGGTGCGGCTGGTCGCCGAGGGCGAGTCGCTGCTGTTCCCCGCGTCGGTGCGGC
AGCTGGCCGCGCGGTACGGCGACGACGGCGGCAACCGGGCGGCGCGCGCGGTACTGGAGCGGGCCCGGCTGACCGAGCGG
GAGGCCGAGGTGCTGCGGCTGATGGCACGCGGACTGTCGAATGCGGAGATCGCGGCCCGGCTGGTGGTGGGGACGGAGAC
GGTGAAGTCCCATGTGAGCGCCGTCCTGGCCAAACTGGGGGCGCGGGATCGCACGCAGGCGGTGATCACGGCGTACGAGT
CGGGGTTCGTGGCGCCGGGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.553

99.545

0.414
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.368