Detailed information NTG0649183

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L3Y29_RS25120
• Genome accession: NZ_CP091326
• Coordinates: 5180161..5180961 (-)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain hvK2115
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5175161..5185961

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3Y29_RS25100 (L3Y29_25100)	dksA	5175741..5176196 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
L3Y29_RS25105 (L3Y29_25105)	sfsA	5176359..5177075 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
L3Y29_RS25110 (L3Y29_25110)	thpR	5177075..5177611 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
L3Y29_RS25115 (L3Y29_25115)	hrpB	5177684..5180113 (+)	2430	WP_029884482.1	ATP-dependent helicase HrpB	-
L3Y29_RS25120 (L3Y29_25120)	pilD	5180161..5180961 (-)	801	WP_002888947.1	A24 family peptidase	Machinery gene
L3Y29_RS25125 (L3Y29_25125)	-	5180958..5181704 (-)	747	WP_004145897.1	type II secretion system protein N	-
L3Y29_RS25130 (L3Y29_25130)	-	5181694..5182179 (-)	486	WP_004151943.1	type II secretion system protein M	-
L3Y29_RS25135 (L3Y29_25135)	gspL	5182172..5183365 (-)	1194	WP_004191957.1	type II secretion system protein GspL	-
L3Y29_RS25140 (L3Y29_25140)	gspK	5183352..5184338 (-)	987	WP_004222697.1	type II secretion system minor pseudopilin GspK	-
L3Y29_RS25145 (L3Y29_25145)	gspJ	5184335..5184931 (-)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
L3Y29_RS25150 (L3Y29_25150)	gspI	5184928..5185294 (-)	367	Protein_4915	type II secretion system minor pseudopilin GspI	-
L3Y29_RS25155 (L3Y29_25155)	gspH	5185291..5185806 (-)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=649183 L3Y29_RS25120 WP_002888947.1 5180161..5180961(-) (pilD) [Klebsiella pneumoniae strain hvK2115]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=649183 L3Y29_RS25120 WP_002888947.1 5180161..5180961(-) (pilD) [Klebsiella pneumoniae strain hvK2115]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425