Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHO27_RS18530 Genome accession   NZ_CP107917
Coordinates   4163784..4164383 (-) Length   199 a.a.
NCBI ID   WP_274241543.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00443     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4158784..4169383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO27_RS18505 (OHO27_18505) - 4158820..4160013 (+) 1194 WP_328425296.1 cytochrome P450 -
  OHO27_RS18510 (OHO27_18510) - 4160094..4160801 (+) 708 WP_328425298.1 response regulator transcription factor -
  OHO27_RS18515 (OHO27_18515) - 4160798..4162174 (+) 1377 WP_328425300.1 HAMP domain-containing sensor histidine kinase -
  OHO27_RS18520 (OHO27_18520) - 4162140..4162643 (-) 504 WP_328425302.1 SgcJ/EcaC family oxidoreductase -
  OHO27_RS18525 (OHO27_18525) - 4163132..4163791 (-) 660 WP_328425304.1 DUF5063 domain-containing protein -
  OHO27_RS18530 (OHO27_18530) recR 4163784..4164383 (-) 600 WP_274241543.1 recombination mediator RecR Machinery gene
  OHO27_RS18535 (OHO27_18535) - 4164482..4164826 (-) 345 WP_328425310.1 YbaB/EbfC family nucleoid-associated protein -
  OHO27_RS18540 (OHO27_18540) - 4165112..4165864 (+) 753 WP_328425312.1 SLATT domain-containing protein -
  OHO27_RS18545 (OHO27_18545) - 4165923..4167476 (-) 1554 WP_328425315.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21808.20 Da        Isoelectric Point: 4.9909

>NTDB_id=649167 OHO27_RS18530 WP_274241543.1 4163784..4164383(-) (recR) [Streptomyces sp. NBC_00443]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNIAQEELCNICRDTRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=649167 OHO27_RS18530 WP_274241543.1 4163784..4164383(-) (recR) [Streptomyces sp. NBC_00443]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGACGGCTGCCCGGCGTCGGTCCCAAGAGCGCCCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAACCGACGGACGTACGGCGCCTCGCGCAGGCCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACGTGCGGGAACATCGCGCAGGAAGAGCTGTGCAACATCTGCCGGGACACGCGCCGCGACCCGGCGGTG
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTGGCGATCGAGCGCACCCGTGAGTTCCGGGGCCGCTACCACGTCCTCGG
CGGCGCGATCAGTCCGATCGAGGGTGTCGGTCCGGACGACCTGCGTATACGAGAACTTCTCGCGAGGTTGGCCGACGGGA
CGGTCACGGAGCTGATCCTGGCCACGGACCCGAACCTGGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452