Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHO27_RS12475 Genome accession   NZ_CP107917
Coordinates   2843431..2844078 (-) Length   215 a.a.
NCBI ID   WP_328423237.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00443     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2838431..2849078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO27_RS12465 (OHO27_12465) - 2839746..2840987 (-) 1242 WP_328423232.1 Ig-like domain-containing protein -
  OHO27_RS12470 (OHO27_12470) glgX 2841147..2843402 (+) 2256 WP_328423234.1 glycogen debranching protein GlgX -
  OHO27_RS12475 (OHO27_12475) vraR 2843431..2844078 (-) 648 WP_328423237.1 response regulator transcription factor Regulator
  OHO27_RS12480 (OHO27_12480) - 2844071..2845324 (-) 1254 WP_328423239.1 sensor histidine kinase -
  OHO27_RS12485 (OHO27_12485) - 2845349..2846083 (-) 735 WP_328423241.1 ABC transporter permease -
  OHO27_RS12490 (OHO27_12490) - 2846080..2847030 (-) 951 WP_328423243.1 ABC transporter ATP-binding protein -
  OHO27_RS12495 (OHO27_12495) - 2847237..2849057 (+) 1821 WP_328423245.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 22562.73 Da        Isoelectric Point: 5.1272

>NTDB_id=649146 OHO27_RS12475 WP_328423237.1 2843431..2844078(-) (vraR) [Streptomyces sp. NBC_00443]
MSSDEASISLLIVDDHPVVRDGLRGMFESAPGFRVLGEAADGVEAVEKAAVLDPDVILMDLRMPGGGGVDAIAELTRRGA
RAKVLVLTTYDTDTDTLPAIEAGATGYLLKDAPRDDLFSAVRAAAEGRTVLSPAVATRLVSAVRTPGATGNEPLSARERE
VLALVAKGTSNREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYQRGILG

Nucleotide


Download         Length: 648 bp        

>NTDB_id=649146 OHO27_RS12475 WP_328423237.1 2843431..2844078(-) (vraR) [Streptomyces sp. NBC_00443]
ATGAGTAGTGACGAGGCGTCCATCTCCCTGCTGATCGTCGACGACCATCCCGTCGTACGGGACGGCCTGCGCGGCATGTT
CGAGTCCGCGCCCGGCTTCCGCGTCCTCGGCGAGGCCGCCGACGGGGTGGAAGCGGTAGAGAAGGCCGCCGTGCTGGACC
CCGACGTGATCCTGATGGACCTGCGCATGCCGGGCGGCGGCGGGGTCGACGCGATCGCCGAACTGACCCGGCGCGGCGCC
CGCGCGAAGGTCCTCGTCCTGACGACGTACGACACGGACACCGACACCCTCCCGGCGATCGAGGCGGGCGCCACCGGCTA
CCTCCTCAAGGACGCCCCGCGCGACGACCTGTTCTCGGCCGTACGCGCCGCCGCCGAAGGCCGCACCGTCCTCTCCCCGG
CTGTCGCCACCCGCCTCGTCTCCGCTGTCCGTACTCCCGGGGCTACCGGCAACGAGCCCCTGTCCGCCCGCGAGCGCGAG
GTACTGGCCCTGGTCGCCAAGGGCACGTCCAACCGCGAGATCGCCCGCGAACTCTTCATCAGCGAGGCGACCGTGAAGAC
CCACCTCACCCACCTGTACGCCAAGCTGGGCGTCAAGGACCGGGCAGCGGCGGTGGCCACGGCGTACCAGCGGGGGATCC
TGGGCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-207)

Response regulator receiver domain (Response_reg)

(11-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.942

96.744

0.377
  degU Bacillus subtilis subsp. subtilis str. 168

36.486

100

0.377