Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   L3D22_RS17235 Genome accession   NZ_CP091317
Coordinates   3800511..3800909 (-) Length   132 a.a.
NCBI ID   WP_115843698.1    Uniprot ID   -
Organism   Lysobacter soli strain RCu6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3795511..3805909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3D22_RS17220 (L3D22_17230) - 3797494..3799515 (-) 2022 WP_115843692.1 methyl-accepting chemotaxis protein -
  L3D22_RS17225 (L3D22_17235) - 3799512..3800111 (-) 600 WP_181902855.1 chemotaxis protein CheW -
  L3D22_RS17230 (L3D22_17240) - 3800127..3800492 (-) 366 WP_115843696.1 response regulator -
  L3D22_RS17235 (L3D22_17245) pilG 3800511..3800909 (-) 399 WP_115843698.1 twitching motility response regulator PilG Regulator
  L3D22_RS17240 (L3D22_17250) gshB 3801289..3802239 (+) 951 WP_253336501.1 glutathione synthase -
  L3D22_RS17245 (L3D22_17255) - 3802295..3803170 (+) 876 WP_253336502.1 energy transducer TonB -
  L3D22_RS17250 (L3D22_17260) tsaB 3803381..3804094 (-) 714 WP_253336503.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14710.06 Da        Isoelectric Point: 7.1360

>NTDB_id=649129 L3D22_RS17235 WP_115843698.1 3800511..3800909(-) (pilG) [Lysobacter soli strain RCu6]
MLDEVRNGSLGGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIKN
NHLFKGTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLDAIRTHVNA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=649129 L3D22_RS17235 WP_115843698.1 3800511..3800909(-) (pilG) [Lysobacter soli strain RCu6]
ATGCTAGACGAGGTCCGCAACGGCAGCCTCGGCGGTCTGAAGGTCATGGTCATCGATGACTCGAAGACGATTCGCCGAAC
CGCCGAGACGTTGCTCAAGCGCGAGGGCTGCGAGGTGGTGACCGCCACCGACGGCTTCGAGGCGCTGGCGAAGATCGCCG
ATCAACAGCCGCAGATCATCTTCGTGGACATCATGATGCCGCGGCTGGATGGTTACCAAACCTGCGCGTTGATCAAGAAC
AACCACCTGTTCAAAGGCACTCCGGTCATCATGCTGTCGTCCAAGGACGGCCTGTTCGACAAGGCACGCGGTCGCATCGT
CGGCTCCGAGCAGTACCTCACCAAACCATTCACACGCGAAGAACTGCTCGACGCGATCCGCACGCACGTAAACGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.194

93.939

0.697
  vicR Streptococcus mutans UA159

40.678

89.394

0.364