Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA71_RS46230 Genome accession   NZ_CP107916
Coordinates   10071483..10072130 (-) Length   215 a.a.
NCBI ID   WP_328370519.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00444     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10066483..10077130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA71_RS46215 (OHA71_46205) - 10067031..10069289 (+) 2259 WP_328370514.1 MMPL family transporter -
  OHA71_RS46220 (OHA71_46210) - 10069297..10070622 (+) 1326 WP_328441974.1 sensor histidine kinase -
  OHA71_RS46225 (OHA71_46215) - 10070619..10071311 (+) 693 WP_328370517.1 response regulator transcription factor -
  OHA71_RS46230 (OHA71_46220) vraR 10071483..10072130 (-) 648 WP_328370519.1 response regulator transcription factor Regulator
  OHA71_RS46235 (OHA71_46225) - 10072127..10073398 (-) 1272 WP_328370521.1 sensor histidine kinase -
  OHA71_RS46240 (OHA71_46230) lgt 10073576..10074441 (+) 866 Protein_9159 prolipoprotein diacylglyceryl transferase -
  OHA71_RS46245 (OHA71_46235) - 10074472..10074912 (+) 441 WP_328353341.1 DUF6069 family protein -
  OHA71_RS46250 (OHA71_46240) - 10075063..10076574 (+) 1512 WP_328370522.1 FG-GAP repeat protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 22246.49 Da        Isoelectric Point: 6.4928

>NTDB_id=649119 OHA71_RS46230 WP_328370519.1 10071483..10072130(-) (vraR) [Streptomyces sp. NBC_00444]
MSTSASPSIRILLADDHLVVREGLAAILATQPDLTVVGEAASGTEAVHQTASLAPDVVLMDLQMPGMDGTAATAAIRATQ
PEVRVLILTTYDTDADITAAVDAGAVGYLLKDTGRHELCEAVRTAARGGAALSPTVAAKVLAHMRGDRAAGLSGRELEVL
SAVARGQSNKQIARALRLSEATVKTHLLHIYAKLDVADRTAAVTAALGRGIIRID

Nucleotide


Download         Length: 648 bp        

>NTDB_id=649119 OHA71_RS46230 WP_328370519.1 10071483..10072130(-) (vraR) [Streptomyces sp. NBC_00444]
ATGAGCACTTCGGCCTCCCCCTCGATCCGCATCCTCCTGGCAGACGACCACCTCGTCGTCCGCGAGGGGCTGGCCGCCAT
CCTCGCCACCCAGCCCGACCTCACGGTCGTCGGCGAAGCAGCCAGCGGTACCGAGGCAGTGCACCAGACCGCGTCACTCG
CACCCGATGTCGTCCTGATGGACCTGCAGATGCCCGGCATGGACGGCACGGCCGCGACCGCCGCCATCCGTGCCACCCAG
CCCGAGGTGCGGGTCCTCATCCTGACCACCTACGACACGGACGCCGACATCACCGCAGCCGTCGACGCCGGCGCGGTCGG
CTACCTGCTCAAGGACACCGGACGACACGAACTGTGCGAGGCCGTGCGTACCGCGGCCCGGGGAGGTGCGGCGCTGTCCC
CCACGGTGGCCGCCAAAGTTCTCGCCCACATGCGCGGTGACCGGGCTGCCGGGCTGTCCGGCCGGGAACTCGAAGTTCTG
TCCGCCGTGGCCCGCGGGCAGAGCAACAAACAGATCGCCCGCGCCCTGCGCCTGTCCGAGGCCACGGTCAAGACCCATCT
GCTGCACATCTACGCCAAGCTCGACGTCGCCGACCGCACCGCCGCCGTCACCGCCGCACTGGGCCGCGGAATCATCCGCA
TCGACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-123)

Bacterial regulatory proteins, luxR family (GerE)

(152-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.827

96.744

0.405
  degU Bacillus subtilis subsp. subtilis str. 168

36.283

100

0.381