Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA71_RS42680 Genome accession   NZ_CP107916
Coordinates   9273501..9274163 (-) Length   220 a.a.
NCBI ID   WP_328368824.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00444     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9268501..9279163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA71_RS42660 (OHA71_42650) - 9269335..9270165 (-) 831 WP_328441724.1 alpha/beta fold hydrolase -
  OHA71_RS42665 (OHA71_42655) sigJ 9270309..9271196 (+) 888 WP_328368817.1 RNA polymerase sigma factor SigJ -
  OHA71_RS42670 (OHA71_42660) - 9271317..9272078 (+) 762 WP_328441725.1 GntR family transcriptional regulator -
  OHA71_RS42675 (OHA71_42665) - 9272167..9273324 (-) 1158 WP_328441726.1 ROK family transcriptional regulator -
  OHA71_RS42680 (OHA71_42670) vraR 9273501..9274163 (-) 663 WP_328368824.1 response regulator transcription factor Regulator
  OHA71_RS42685 (OHA71_42675) - 9274178..9275347 (-) 1170 WP_328441727.1 histidine kinase -
  OHA71_RS42690 (OHA71_42680) - 9275456..9276376 (+) 921 WP_328441728.1 ABC transporter ATP-binding protein -
  OHA71_RS42695 (OHA71_42685) - 9276378..9277103 (+) 726 WP_328441729.1 ABC transporter permease -
  OHA71_RS42700 (OHA71_42690) - 9277162..9277575 (+) 414 WP_328441730.1 hypothetical protein -
  OHA71_RS42705 (OHA71_42695) mug 9277577..9278125 (-) 549 WP_328442592.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23496.09 Da        Isoelectric Point: 4.7614

>NTDB_id=649110 OHA71_RS42680 WP_328368824.1 9273501..9274163(-) (vraR) [Streptomyces sp. NBC_00444]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVDDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYADGGGNRAARAVMERAQLTER
EAEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=649110 OHA71_RS42680 WP_328368824.1 9273501..9274163(-) (vraR) [Streptomyces sp. NBC_00444]
ATGCCGGTCACCGTTCTCCTCGTCGACGACGAGCCCCTTGTCCGAGCGGGTCTGCGGGCCGTGCTGGAGGCGCAGCCCGA
CATCGAGGTGGTCGGCGAGGCGGCCGACGGGGCGGCGGTGATCCCGCTGGTGCGGCAGTTGCGGCCGGACGTGGTCGCCA
TGGACGTACGGATGCCGCTCCTTGACGGCATCGAGGCCACGCGCGCGGTGCTGCGGACGGTGGACGATCCGCCGAAGATC
CTGGTGGTGACGACCTTCGAGAACGACGAGTACGTGTACGAGGCGCTTCGGGCCGGTGCCGACGGGTTCCTGCTGAAGCG
GGCCCGGCCCGCCGAGATCGTGCACGCGGTGCGGCTGGTCGCCGAGGGCGAGTCGCTGCTGTTCCCGGCCTCGGTGCGGC
AGCTCGCCGCCGAGTACGCGGACGGCGGCGGGAACCGCGCGGCCCGCGCCGTGATGGAGCGGGCCCAGTTGACCGAGCGG
GAGGCCGAGGTGCTGCGGCTGATGGCCAGAGGGCTGTCGAACGCGGAGATCGCCGCCCGGCTGGTCGTCGGCACGGAGAC
GGTCAAGTCGCATGTCAGCGCCGTCCTGGCCAAGTTGGGAGCCCGCGATCGCACACAGGCGGTGATCGCGGCGTACGAGT
CGGGGTTCGTCGCGCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.096

99.545

0.409
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.368