Detailed information NTG0649098

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L2Y89_RS03565
• Genome accession: NZ_CP091311
• Coordinates: 760866..761732 (-)
• Length: 288 a.a.
• NCBI ID: WP_033690441.1
• Uniprot ID: A0AAJ5S307
• Organism: Pseudomonas juntendi strain 18091276
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 755866..766732

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L2Y89_RS03535 (L2Y89_03535)	-	756862..758157 (-)	1296	WP_009683004.1	NAD(P)/FAD-dependent oxidoreductase	-
L2Y89_RS03540 (L2Y89_03540)	-	758242..758415 (-)	174	WP_033744188.1	DUF3094 family protein	-
L2Y89_RS03545 (L2Y89_03545)	-	758549..759178 (-)	630	WP_009683003.1	DUF1780 domain-containing protein	-
L2Y89_RS03550 (L2Y89_03550)	-	759311..759994 (+)	684	WP_009683002.1	energy-coupling factor ABC transporter permease	-
L2Y89_RS03555 (L2Y89_03555)	yacG	760046..760246 (-)	201	WP_237144498.1	DNA gyrase inhibitor YacG	-
L2Y89_RS03560 (L2Y89_03560)	coaE	760243..760866 (-)	624	WP_009683000.1	dephospho-CoA kinase	-
L2Y89_RS03565 (L2Y89_03565)	pilD	760866..761732 (-)	867	WP_033690441.1	prepilin peptidase	Machinery gene
L2Y89_RS03570 (L2Y89_03570)	-	761735..762943 (-)	1209	WP_009682998.1	type II secretion system F family protein	-
L2Y89_RS03575 (L2Y89_03575)	-	763159..763569 (+)	411	WP_009682997.1	pilin	-
L2Y89_RS03585 (L2Y89_03585)	-	763878..765167 (+)	1290	WP_237144500.1	tyrosine-type recombinase/integrase	-
L2Y89_RS03590 (L2Y89_03590)	-	765445..766224 (+)	780	WP_237144502.1	hypothetical protein	-
L2Y89_RS03595 (L2Y89_03595)	-	766294..766554 (+)	261	WP_237144504.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31740.91 Da
• Isoelectric Point: 8.0860

>NTDB_id=649098 L2Y89_RS03565 WP_033690441.1 760866..761732(-) (pilD) [Pseudomonas juntendi strain 18091276]
MTLWTLLAEQPAYFYTLASVLGLLVGSFLNVLVYRLPIMLERQWQREAQQVLGLPTTQHPRFDLCLPASRCPQCAHPIRP
WQNIPVLSYLALRGRCSACKARISPRYPLVEVASALLSLLVAWRFGASAEALLALPLTWCLLALSLIDADHQLLPDVLVL
PMLWLGLIVNAFAVYVPLGSAVWGAVAGYLCLWSVYWLFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLHLHRHALGAAMPFGPYLAIAGWIAVLWGDEIYASYLQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=649098 L2Y89_RS03565 WP_033690441.1 760866..761732(-) (pilD) [Pseudomonas juntendi strain 18091276]
ATGACTTTATGGACCTTGCTGGCTGAACAGCCGGCGTACTTCTACACCCTGGCGAGCGTGCTCGGCCTGCTGGTAGGCAG
CTTTCTGAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAAGCGCAGCAGGTTCTGGGGC
TGCCGACTACGCAGCACCCGCGCTTCGACCTGTGCCTGCCCGCTTCGCGCTGCCCGCAGTGCGCACACCCGATTCGCCCG
TGGCAGAACATTCCAGTGCTCAGCTACCTGGCCTTGCGTGGGCGCTGCTCTGCCTGCAAGGCCCGCATCAGCCCGCGTTA
CCCACTGGTGGAAGTGGCCAGTGCGCTGCTGTCGCTGCTGGTGGCCTGGCGTTTTGGTGCGTCAGCCGAGGCATTGCTGG
CATTGCCCTTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGATCACCAGCTGTTGCCGGACGTACTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTTGCCGTGTATGTGCCGCTGGGCAGTGCGGTATGGGGGGCGGTGGC
GGGTTACCTCTGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGTTATGGCGACTTCA
AGCTGATGGCGCTGATCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGTTGGCCTGTGCTTGTTGCATTTGCACCGGCACGCACTAGGCGCGGCGATGCCGTTTGGCCCTTATCTGGCCATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCTTACCTGCAACTGCTGGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.878	96.528	0.51
pilD	Acinetobacter baumannii D1279779	52.03	94.097	0.49
pilD	Acinetobacter nosocomialis M2	51.292	94.097	0.483
pilD	Vibrio campbellii strain DS40M4	49.638	95.833	0.476
pilD	Neisseria gonorrhoeae MS11	50.189	92.014	0.462