Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHA71_RS22870 Genome accession   NZ_CP107916
Coordinates   5034945..5036354 (+) Length   469 a.a.
NCBI ID   WP_328359510.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00444     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5029945..5041354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA71_RS22850 (OHA71_22845) - 5030138..5030962 (-) 825 WP_328359498.1 sugar phosphate isomerase/epimerase -
  OHA71_RS22855 (OHA71_22850) - 5031012..5032028 (-) 1017 WP_328359501.1 Ppx/GppA phosphatase family protein -
  OHA71_RS22860 (OHA71_22855) - 5032112..5032969 (+) 858 WP_328359504.1 hypothetical protein -
  OHA71_RS22865 (OHA71_22860) - 5033015..5034745 (-) 1731 WP_328439242.1 hypothetical protein -
  OHA71_RS22870 (OHA71_22865) radA/sms 5034945..5036354 (+) 1410 WP_328359510.1 DNA repair protein RadA Machinery gene
  OHA71_RS22875 (OHA71_22870) disA 5036437..5037561 (+) 1125 WP_210578002.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA71_RS22880 (OHA71_22875) - 5037669..5038511 (-) 843 WP_328439243.1 hypothetical protein -
  OHA71_RS22885 (OHA71_22880) - 5038716..5039651 (+) 936 WP_328359517.1 A/G-specific adenine glycosylase -
  OHA71_RS22890 (OHA71_22885) - 5039896..5040453 (+) 558 WP_210577999.1 SigE family RNA polymerase sigma factor -
  OHA71_RS22895 (OHA71_22890) - 5040555..5041115 (+) 561 WP_328442375.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49727.88 Da        Isoelectric Point: 8.0022

>NTDB_id=649063 OHA71_RS22870 WP_328359510.1 5034945..5036354(+) (radA/sms) [Streptomyces sp. NBC_00444]
MAARTKSTKDRPSYRCTECGWQTAKWLGRCPECQAWGTIEEYGAPAVRTTTPGRVTTSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKALDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPGDPGKIPAGMKVLEVADIGDALRVLPRSRRRDAPRDEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=649063 OHA71_RS22870 WP_328359510.1 5034945..5036354(+) (radA/sms) [Streptomyces sp. NBC_00444]
ATGGCTGCCCGTACGAAATCCACCAAGGACCGCCCGTCCTACCGCTGCACGGAGTGTGGCTGGCAGACGGCGAAGTGGCT
CGGTCGGTGCCCCGAGTGCCAGGCCTGGGGGACGATCGAGGAGTACGGCGCACCCGCGGTCCGCACGACGACACCGGGGC
GCGTCACCACCTCCGCGCTGCCCATCGGCCAGGTCGACGGCCGTCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTCCCCGGCGCCGTGGTCCTCCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
CCTGCTCGACGTGGCGGCCAAGGCGGCGAGCGACGAGCACCGCACGCTCTACGTCACGGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCCCTCGACGACCACCTCTATCTCGCCGCCGAGACCGATCTGGCCGCCGTGCTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTGATCCTCGACTCCGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
ACCCGGCGGCATGGCGCAGGTGCGCGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAACGCGGCATGTCCACGCTCC
TTGTGGGCCATGTCACCAAGGACGGCGCCATCGCGGGCCCCCGGCTCCTCGAGCACCTCGTGGATGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTCAGGCTCGTACGAGGCGTCAAGAACCGGTACGGCGCCACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCACCGACCCGAGCGGCCTGTTCCTGACCAGGCGGGCCGAGCCGGTGCCCG
GCACCTGCCTGACCGTCACGCTGGAGGGCCGCCGCCCCCTGGTCGCCGAAGTCCAGGCGCTGACCGTCGACTCCCAGATC
CCCTCCCCCCGCCGCACCACATCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGGGGCAG
AATCAGCGCGTTGGGCAAACGGGACATTTACTCCGCGACGGTCGGCGGAGTGAAGCTCTCCGAACCCGCCGCGGATCTGG
CCATCGCCCTCGCCCTGGCCTCGGCCGCGAGCGACACCCCCCTGCCGAAGAACCTCGTCGCGATCGGCGAAGTGGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCAGACTCTCCGAAGCGCACCGTCTGGGCTTCACGCACGCGCTCGT
GCCGGGCGATCCCGGCAAGATCCCTGCCGGTATGAAGGTCCTGGAAGTGGCCGACATAGGGGACGCTCTGAGAGTCCTTC
CGCGCTCGCGTCGCCGAGACGCCCCACGGGACGAGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.699

96.375

0.412
  radA Streptococcus mitis SK321

42.478

96.375

0.409
  radA Streptococcus mitis NCTC 12261

42.478

96.375

0.409
  radA Streptococcus pneumoniae Rx1

42.539

95.736

0.407
  radA Streptococcus pneumoniae TIGR4

42.539

95.736

0.407
  radA Streptococcus pneumoniae D39

42.539

95.736

0.407
  radA Streptococcus pneumoniae R6

42.539

95.736

0.407