Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG800_RS42485 Genome accession   NZ_CP107914
Coordinates   9244827..9245489 (-) Length   220 a.a.
NCBI ID   WP_328368824.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00445     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9239827..9250489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG800_RS42465 (OG800_42445) - 9240661..9241491 (-) 831 WP_328368815.1 alpha/beta fold hydrolase -
  OG800_RS42470 (OG800_42450) sigJ 9241635..9242522 (+) 888 WP_328368817.1 RNA polymerase sigma factor SigJ -
  OG800_RS42475 (OG800_42455) - 9242643..9243404 (+) 762 WP_328368819.1 GntR family transcriptional regulator -
  OG800_RS42480 (OG800_42460) - 9243493..9244650 (-) 1158 WP_328368821.1 ROK family transcriptional regulator -
  OG800_RS42485 (OG800_42465) vraR 9244827..9245489 (-) 663 WP_328368824.1 response regulator transcription factor Regulator
  OG800_RS42490 (OG800_42470) - 9245504..9246673 (-) 1170 WP_328368826.1 histidine kinase -
  OG800_RS42495 (OG800_42475) - 9246782..9247702 (+) 921 WP_328368829.1 ABC transporter ATP-binding protein -
  OG800_RS42500 (OG800_42480) - 9247704..9248429 (+) 726 WP_328368832.1 ABC transporter permease -
  OG800_RS42505 (OG800_42485) - 9248487..9248933 (+) 447 WP_328368835.1 hypothetical protein -
  OG800_RS42510 (OG800_42490) mug 9248938..9249483 (-) 546 WP_328372594.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23496.09 Da        Isoelectric Point: 4.7614

>NTDB_id=649002 OG800_RS42485 WP_328368824.1 9244827..9245489(-) (vraR) [Streptomyces sp. NBC_00445]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVDDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYADGGGNRAARAVMERAQLTER
EAEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=649002 OG800_RS42485 WP_328368824.1 9244827..9245489(-) (vraR) [Streptomyces sp. NBC_00445]
ATGCCGGTCACCGTTCTCCTCGTCGACGACGAGCCCCTTGTCCGAGCGGGTCTGCGGGCCGTGCTGGAGGCGCAGCCCGA
CATCGAGGTGGTCGGCGAGGCGGCCGACGGGGCGGCGGTGATCCCGCTGGTGCGGCAGTTGCGGCCGGACGTGGTCGCCA
TGGACGTACGGATGCCGCTCCTTGACGGCATCGAGGCCACGCGCGCGGTGCTGCGGACGGTGGACGATCCGCCGAAGATC
CTGGTGGTGACGACCTTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGGGCCGGTGCCGACGGGTTCCTGCTGAAGCG
GGCCCGGCCCGCCGAGATCGTGCACGCGGTGCGGCTGGTCGCCGAGGGCGAGTCGTTGCTGTTCCCGGCCTCGGTGCGGC
AGCTCGCCGCCGAGTACGCGGACGGCGGCGGGAACCGCGCGGCCCGCGCCGTGATGGAGCGGGCCCAGTTGACCGAGCGG
GAGGCCGAGGTGCTGCGGCTGATGGCCAGAGGGCTGTCGAACGCGGAGATCGCCGCCCGGCTGGTCGTCGGCACGGAGAC
GGTCAAGTCGCATGTCAGCGCCGTCCTGGCCAAGTTGGGAGCCCGCGATCGCACACAGGCGGTGATCGCGGCGTACGAGT
CGGGGTTCGTCGCGCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.096

99.545

0.409
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.368