Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG800_RS23865 Genome accession   NZ_CP107914
Coordinates   5237213..5237887 (-) Length   224 a.a.
NCBI ID   WP_210580563.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00445     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5232213..5242887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG800_RS23840 (OG800_23830) - 5232943..5233377 (-) 435 WP_328360023.1 VOC family protein -
  OG800_RS23845 (OG800_23835) - 5233393..5233770 (-) 378 WP_328360026.1 MerR family transcriptional regulator -
  OG800_RS23850 (OG800_23840) - 5233887..5234960 (+) 1074 WP_328360029.1 alkene reductase -
  OG800_RS23855 (OG800_23845) vraR 5235087..5235752 (-) 666 WP_210580566.1 response regulator transcription factor Regulator
  OG800_RS23860 (OG800_23850) - 5235749..5237089 (-) 1341 WP_328360032.1 histidine kinase -
  OG800_RS23865 (OG800_23855) vraR 5237213..5237887 (-) 675 WP_210580563.1 response regulator transcription factor Regulator
  OG800_RS23870 (OG800_23860) - 5237884..5239224 (-) 1341 WP_328372094.1 sensor histidine kinase -
  OG800_RS23875 (OG800_23865) - 5239364..5240551 (-) 1188 WP_328372096.1 acyltransferase -
  OG800_RS23880 (OG800_23870) - 5240658..5241692 (-) 1035 WP_328360036.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24158.00 Da        Isoelectric Point: 5.1420

>NTDB_id=648961 OG800_RS23865 WP_210580563.1 5237213..5237887(-) (vraR) [Streptomyces sp. NBC_00445]
MTSGTIRVLIADDQQMVRQGFTVLLNTQPDIDVIGQAVDGMDAVAKVAELAPDVVLMDIRMPELSGIEATRRIVGVTPHI
KVLVLTTFDLDEYVYEALRAGASGFLLKDASADKLAEAIRVVAAGDALLAPGITRRLIAEFSRLGDKPRAPLKTRVGELT
ERETEVLALIAQGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=648961 OG800_RS23865 WP_210580563.1 5237213..5237887(-) (vraR) [Streptomyces sp. NBC_00445]
ATGACGAGCGGCACCATCCGCGTACTCATCGCCGACGACCAGCAGATGGTCCGGCAGGGCTTCACCGTGCTGCTCAACAC
CCAGCCCGACATCGATGTGATCGGCCAGGCGGTGGACGGCATGGACGCGGTCGCCAAGGTCGCCGAACTCGCCCCGGACG
TCGTCCTCATGGACATCCGCATGCCCGAACTCAGCGGCATCGAGGCCACCCGCCGCATCGTCGGCGTGACCCCGCACATC
AAGGTGCTCGTGCTGACCACCTTCGACCTGGACGAGTACGTGTACGAGGCGCTGCGTGCCGGCGCGTCCGGGTTCCTGCT
GAAGGACGCCTCCGCCGACAAGCTGGCCGAGGCGATCCGGGTGGTGGCGGCCGGCGACGCGCTGCTCGCGCCTGGTATCA
CCCGGCGGCTGATCGCCGAGTTCTCCCGTCTCGGCGACAAGCCGCGTGCCCCGCTCAAGACCCGCGTCGGCGAGCTGACC
GAGCGGGAGACGGAAGTGCTGGCGCTGATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCGAGCGCCTGGTCGTCGCCGA
GCAGACCGTGAAGACCCACGTGGGCCGCATCCTGGTGAAGCTGGGCCTGCGCGACCGCACGCAGGCGGCCGTGTTCGCGT
ACGAGTCGGGGCTGGTGAGACCCTCGGGGTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-120)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.907

96.429

0.433
  degU Bacillus subtilis subsp. subtilis str. 168

41.85

100

0.424