Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG800_RS23690 Genome accession   NZ_CP107914
Coordinates   5202944..5203543 (-) Length   199 a.a.
NCBI ID   WP_328359952.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00445     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5197944..5208543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG800_RS23670 (OG800_23660) - 5200191..5200502 (-) 312 WP_307841028.1 trypco2 family protein -
  OG800_RS23675 (OG800_23665) - 5200616..5201350 (+) 735 WP_328359944.1 sulfite exporter TauE/SafE family protein -
  OG800_RS23680 (OG800_23670) - 5201374..5202243 (+) 870 WP_328359947.1 PhzF family phenazine biosynthesis isomerase -
  OG800_RS23685 (OG800_23675) - 5202262..5202951 (-) 690 WP_328359949.1 DUF5063 domain-containing protein -
  OG800_RS23690 (OG800_23680) recR 5202944..5203543 (-) 600 WP_328359952.1 recombination mediator RecR Machinery gene
  OG800_RS23695 (OG800_23685) - 5203635..5203979 (-) 345 WP_210580757.1 YbaB/EbfC family nucleoid-associated protein -
  OG800_RS23700 (OG800_23690) - 5204250..5204999 (+) 750 WP_328359956.1 SLATT domain-containing protein -
  OG800_RS23705 (OG800_23695) - 5205165..5206568 (-) 1404 WP_328359959.1 M20/M25/M40 family metallo-hydrolase -
  OG800_RS23710 (OG800_23700) - 5206668..5208215 (-) 1548 WP_328359962.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21847.19 Da        Isoelectric Point: 5.1616

>NTDB_id=648959 OG800_RS23690 WP_328359952.1 5202944..5203543(-) (recR) [Streptomyces sp. NBC_00445]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCAICGNVAQEENCNICRDTRRDHAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=648959 OG800_RS23690 WP_328359952.1 5202944..5203543(-) (recR) [Streptomyces sp. NBC_00445]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAACCGACAGATGTACGGCGCCTTGCGCAGGCCCTCATGGAGGTCAAGGCCAAGGTCC
GCTTCTGCGCGATCTGCGGGAACGTCGCGCAGGAGGAGAACTGCAACATCTGCCGCGACACCCGCCGCGACCACGCCGTC
ATCTGCGTGGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGCACGCGCGAGTTCCGCGGCCGCTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGTGTCGGTCCGGACGACCTGCGTATACGAGAACTTCTCGCGCGGTTGGCCGACGGGA
CGGTCACGGAACTGATCCTGGCGACGGACCCGAATCTGGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457