Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG800_RS17635 Genome accession   NZ_CP107914
Coordinates   3919825..3920466 (+) Length   213 a.a.
NCBI ID   WP_328356853.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00445     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3914825..3925466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG800_RS17610 (OG800_17590) - 3915746..3916069 (-) 324 WP_210572623.1 STAS domain-containing protein -
  OG800_RS17615 (OG800_17595) - 3916220..3917068 (-) 849 WP_301984318.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  OG800_RS17620 (OG800_17600) - 3917232..3917804 (+) 573 WP_328356843.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OG800_RS17625 (OG800_17605) - 3917850..3918479 (-) 630 WP_328356846.1 hypothetical protein -
  OG800_RS17630 (OG800_17610) - 3918632..3919828 (+) 1197 WP_328356849.1 histidine kinase -
  OG800_RS17635 (OG800_17615) vraR 3919825..3920466 (+) 642 WP_328356853.1 response regulator transcription factor Regulator
  OG800_RS17640 (OG800_17620) - 3920630..3922456 (+) 1827 WP_328356856.1 glycoside hydrolase family 18 chitinase -
  OG800_RS17645 (OG800_17625) - 3922462..3922908 (-) 447 WP_301984312.1 DUF2550 domain-containing protein -
  OG800_RS17650 (OG800_17630) - 3923038..3923412 (-) 375 WP_189942660.1 F0F1 ATP synthase subunit epsilon -
  OG800_RS17655 (OG800_17635) atpD 3923675..3925111 (-) 1437 WP_210572607.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22772.26 Da        Isoelectric Point: 4.8750

>NTDB_id=648942 OG800_RS17635 WP_328356853.1 3919825..3920466(+) (vraR) [Streptomyces sp. NBC_00445]
MIRVLVAEDQSAVRAGLALILRSASDIEVVGEAADGEQAVARARELRPDLVLMDVQMPRLDGVSATRQVVAEGLADVLVL
TTFDLDEYVFGALRAGASGFLLKNTDAKDLLEAVRTVARGEGIVAPAVTRRLIAEFAARPAREPKPEPAALDTLTRRERE
VLSCLGEGLSNAEIAGRLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI

Nucleotide


Download         Length: 642 bp        

>NTDB_id=648942 OG800_RS17635 WP_328356853.1 3919825..3920466(+) (vraR) [Streptomyces sp. NBC_00445]
ATGATCCGAGTGCTCGTCGCCGAGGACCAGTCCGCCGTGCGCGCCGGTCTCGCCCTCATCCTGCGCAGCGCGTCCGACAT
CGAGGTGGTCGGCGAGGCGGCGGACGGCGAGCAGGCGGTGGCGCGGGCCCGTGAACTGCGGCCGGACCTGGTGCTGATGG
ACGTTCAGATGCCGCGCCTTGACGGGGTGTCGGCGACCCGGCAGGTCGTGGCGGAGGGGCTGGCGGATGTGCTGGTCCTG
ACCACCTTCGACCTGGACGAGTATGTCTTCGGGGCGCTGCGGGCGGGCGCGTCCGGCTTCCTGCTCAAGAACACCGACGC
GAAGGATCTACTGGAGGCGGTACGGACGGTGGCGCGCGGCGAGGGCATCGTCGCCCCGGCCGTCACCCGGCGCCTGATCG
CCGAGTTCGCCGCCCGCCCCGCACGGGAACCGAAGCCCGAACCGGCGGCGCTTGACACCCTCACCCGGCGCGAGCGCGAG
GTGCTGTCCTGTCTCGGCGAGGGACTGTCGAACGCCGAGATCGCCGGCCGCCTCGACATGGCGGAGGCGACCGTGAAGAC
GCACGTCAGCAGGCTGCTGGGGAAGCTGGAGCTGCGCAGCCGGGTGCAAGCGGCGGTGCTGGCACAGGAGTTGGGGATCT
AG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(152-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.788

97.653

0.418
  degU Bacillus subtilis subsp. subtilis str. 168

39.819

100

0.413