Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L3C06_RS00055 Genome accession   NZ_CP091289
Coordinates   13230..13826 (+) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei subsp. paracasei strain GR0562     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8230..18826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3C06_RS00035 (L3C06_00035) gyrA 8607..11228 (+) 2622 WP_003584054.1 DNA gyrase subunit A -
  L3C06_RS00040 (L3C06_00040) deoC 11333..12037 (-) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  L3C06_RS00045 (L3C06_00045) ssb 12344..12775 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  L3C06_RS00050 (L3C06_00050) rpsF 12903..13199 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  L3C06_RS00055 (L3C06_00055) ssb 13230..13826 (+) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  L3C06_RS00060 (L3C06_00060) rpsR 13913..14149 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  L3C06_RS00065 (L3C06_00065) - 14591..16069 (+) 1479 WP_019911508.1 cytochrome ubiquinol oxidase subunit I -
  L3C06_RS00070 (L3C06_00070) cydB 16062..17081 (+) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  L3C06_RS00075 (L3C06_00075) - 17108..17302 (+) 195 WP_003568474.1 hypothetical protein -
  L3C06_RS00080 (L3C06_00080) - 17375..17968 (-) 594 WP_016374969.1 TMEM175 family protein -
  L3C06_RS00085 (L3C06_00085) - 18365..18760 (-) 396 WP_016363285.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=648940 L3C06_RS00055 WP_003568462.1 13230..13826(+) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain GR0562]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=648940 L3C06_RS00055 WP_003568462.1 13230..13826(+) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain GR0562]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACGAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGTGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAGGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485