Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG236_RS25140 Genome accession   NZ_CP107910
Coordinates   5490156..5490755 (+) Length   199 a.a.
NCBI ID   WP_266518689.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00453     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5485156..5495755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG236_RS25110 (OG236_25120) - 5485333..5485935 (+) 603 WP_266518679.1 type 1 glutamine amidotransferase family protein -
  OG236_RS25115 (OG236_25125) - 5485932..5486390 (+) 459 WP_266588886.1 MarR family transcriptional regulator -
  OG236_RS25120 (OG236_25130) - 5486476..5488410 (+) 1935 WP_266588888.1 protein kinase -
  OG236_RS25125 (OG236_25135) - 5488467..5488706 (+) 240 Protein_4960 phosphate ABC transporter substrate-binding protein -
  OG236_RS25130 (OG236_25140) - 5488734..5489483 (-) 750 WP_266588890.1 SLATT domain-containing protein -
  OG236_RS25135 (OG236_25145) - 5489752..5490096 (+) 345 WP_266518687.1 YbaB/EbfC family nucleoid-associated protein -
  OG236_RS25140 (OG236_25150) recR 5490156..5490755 (+) 600 WP_266518689.1 recombination mediator RecR Machinery gene
  OG236_RS25145 (OG236_25155) - 5490748..5491407 (+) 660 WP_266518691.1 DUF5063 domain-containing protein -
  OG236_RS25150 (OG236_25160) - 5491472..5492206 (-) 735 WP_266518693.1 sulfite exporter TauE/SafE family protein -
  OG236_RS25155 (OG236_25165) - 5492342..5492515 (+) 174 WP_266518695.1 hypothetical protein -
  OG236_RS25160 (OG236_25170) - 5492698..5493204 (+) 507 WP_266518697.1 SgcJ/EcaC family oxidoreductase -
  OG236_RS25165 (OG236_25175) - 5493208..5494578 (-) 1371 WP_266518699.1 HAMP domain-containing sensor histidine kinase -
  OG236_RS25170 (OG236_25180) - 5494578..5495273 (-) 696 WP_266925630.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21798.16 Da        Isoelectric Point: 4.9909

>NTDB_id=648788 OG236_RS25140 WP_266518689.1 5490156..5490755(+) (recR) [Streptomyces sp. NBC_00453]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNIAQEELCNICRDTRRDASV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=648788 OG236_RS25140 WP_266518689.1 5490156..5490755(+) (recR) [Streptomyces sp. NBC_00453]
TTGTACGAAGGCGTGGTGCAGGACCTGATCGACGAACTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCCCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAACCGACGGACGTACGGCGCCTCGCGCAGGCCCTCATGGAGGTCAAGGCGAAGGTCC
GCTTCTGTGCGACCTGCGGCAACATCGCGCAGGAAGAGCTGTGCAACATCTGCCGCGACACGCGCCGCGACGCCTCCGTC
ATCTGCGTGGTGGAGGAGCCGAAGGACGTGGTCGCCATCGAGCGCACACGTGAGTTCCGGGGCCGCTACCACGTCCTGGG
CGGAGCGATCAGCCCCATCGAGGGTGTGGGTCCCGACGACCTGCGTATACGAGAACTTCTCGCGCGGTTGGCCGACGGGA
CGGTCACGGAACTGATCCTGGCCACGGACCCGAACCTGGAGGGCGAGGCCACAGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452