Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H7R02_RS05880 Genome accession   NZ_AP021963
Coordinates   1235588..1236325 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain WP3-W18-CRE-03     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1230588..1241325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R02_RS05850 (WP3W18C03_11470) yfiL 1230747..1231112 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  H7R02_RS05855 (WP3W18C03_11480) aroF 1231322..1232392 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  H7R02_RS05860 (WP3W18C03_11490) tyrA 1232403..1233524 (+) 1122 WP_001539387.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  H7R02_RS05865 (WP3W18C03_11500) pheA 1233567..1234727 (-) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  H7R02_RS05870 pheL 1234826..1234873 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  H7R02_RS05875 (WP3W18C03_11510) raiA 1234977..1235318 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  H7R02_RS05880 (WP3W18C03_11520) comL 1235588..1236325 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  H7R02_RS05885 (WP3W18C03_11530) rluD 1236460..1237440 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7R02_RS05890 (WP3W18C03_11540) yfiH 1237437..1238168 (+) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  H7R02_RS05895 (WP3W18C03_11550) clpC 1238298..1240871 (+) 2574 WP_001539382.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=64876 H7R02_RS05880 WP_000197686.1 1235588..1236325(-) (comL) [Escherichia coli strain WP3-W18-CRE-03]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=64876 H7R02_RS05880 WP_000197686.1 1235588..1236325(-) (comL) [Escherichia coli strain WP3-W18-CRE-03]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment