Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG236_RS06855 Genome accession   NZ_CP107910
Coordinates   1509507..1510169 (+) Length   220 a.a.
NCBI ID   WP_266530773.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00453     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504507..1515169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG236_RS06830 (OG236_06840) mug 1505600..1506151 (+) 552 WP_328432756.1 G/U mismatch-specific DNA glycosylase -
  OG236_RS06835 (OG236_06845) - 1506129..1506539 (-) 411 WP_266530765.1 hypothetical protein -
  OG236_RS06840 (OG236_06850) - 1506581..1507303 (-) 723 WP_328431105.1 ABC transporter permease -
  OG236_RS06845 (OG236_06855) - 1507306..1508226 (-) 921 WP_328431106.1 ABC transporter ATP-binding protein -
  OG236_RS06850 (OG236_06860) - 1508335..1509492 (+) 1158 WP_266923340.1 histidine kinase -
  OG236_RS06855 (OG236_06865) vraR 1509507..1510169 (+) 663 WP_266530773.1 response regulator transcription factor Regulator
  OG236_RS06860 (OG236_06870) - 1510328..1511485 (+) 1158 WP_266530774.1 ROK family transcriptional regulator -
  OG236_RS06865 (OG236_06875) - 1511556..1512317 (-) 762 WP_266530776.1 GntR family transcriptional regulator -
  OG236_RS06870 (OG236_06880) - 1512508..1513392 (-) 885 WP_328431107.1 RNA polymerase sigma-70 factor -
  OG236_RS06875 (OG236_06885) - 1513504..1514157 (+) 654 WP_266530779.1 NAD(P)-binding domain-containing protein -
  OG236_RS06880 (OG236_06890) - 1514258..1514719 (-) 462 WP_328431108.1 transposase family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23684.27 Da        Isoelectric Point: 4.7964

>NTDB_id=648755 OG236_RS06855 WP_266530773.1 1509507..1510169(+) (vraR) [Streptomyces sp. NBC_00453]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRRLRPDVVAMDVRMPLLDGIEATRAVLRTVDEPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYGESDGNRAARDAMERARLTER
EAEVLRLMARGLSNAEIAARLIVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=648755 OG236_RS06855 WP_266530773.1 1509507..1510169(+) (vraR) [Streptomyces sp. NBC_00453]
ATGCCGGTCACCGTTCTCCTCGTCGACGACGAGCCCCTCGTACGCGCTGGTCTGCGGGCCGTTCTGGAGGCGCAGCCCGA
CATCGAGGTCGTCGGGGAGGCCGCCGACGGGGCGGCGGTGATCCCGCTCGTGCGCCGGCTGCGGCCCGACGTGGTCGCCA
TGGACGTACGGATGCCGCTGCTGGACGGCATCGAGGCCACGCGCGCGGTGCTGCGGACGGTCGACGAGCCGCCGAAGATC
CTCGTGGTGACGACGTTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGGGCCGGCGCCGACGGGTTCCTGCTGAAGCG
GGCCCGCCCGGCCGAGATCGTGCACGCGGTGCGGCTGGTCGCGGAGGGCGAGTCGCTGCTGTTCCCGGCCTCCGTGCGGC
AGTTGGCCGCCGAGTACGGCGAGAGCGACGGCAACCGGGCCGCCCGGGACGCGATGGAACGGGCCCGGCTGACCGAACGG
GAGGCCGAGGTGTTGCGGCTGATGGCCCGCGGGCTGTCCAACGCGGAGATCGCCGCCCGACTGATCGTCGGCACGGAGAC
AGTGAAGTCGCACGTGAGCGCCGTACTGGCGAAACTCGGCGCGCGTGATCGCACTCAGGCCGTGATCGCCGCGTACGAGT
CGGGCTTCGTGGCCCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.743

99.091

0.414
  degU Bacillus subtilis subsp. subtilis str. 168

37.054

100

0.377