Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHU74_RS32795 Genome accession   NZ_CP107907
Coordinates   7188101..7188781 (-) Length   226 a.a.
NCBI ID   WP_371619263.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00454     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7183101..7193781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU74_RS32775 (OHU74_32755) - 7183170..7185026 (-) 1857 WP_371619261.1 GNAT family N-acetyltransferase -
  OHU74_RS32780 (OHU74_32760) - 7185130..7185552 (+) 423 WP_330300040.1 DUF350 domain-containing protein -
  OHU74_RS32785 (OHU74_32765) - 7185649..7186884 (-) 1236 WP_371619883.1 acyltransferase -
  OHU74_RS32790 (OHU74_32770) - 7186899..7187942 (-) 1044 WP_371619262.1 alpha/beta hydrolase -
  OHU74_RS32795 (OHU74_32775) vraR 7188101..7188781 (-) 681 WP_371619263.1 response regulator Regulator
  OHU74_RS32800 (OHU74_32780) - 7188778..7190139 (-) 1362 WP_371619264.1 sensor histidine kinase -
  OHU74_RS32805 (OHU74_32785) - 7190263..7191210 (+) 948 WP_371619265.1 AEC family transporter -
  OHU74_RS32810 (OHU74_32790) - 7191252..7191644 (+) 393 WP_371619266.1 hypothetical protein -
  OHU74_RS32815 (OHU74_32795) - 7191598..7192515 (-) 918 WP_371619267.1 trypsin-like peptidase domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24343.14 Da        Isoelectric Point: 5.3549

>NTDB_id=648738 OHU74_RS32795 WP_371619263.1 7188101..7188781(-) (vraR) [Streptomyces sp. NBC_00454]
MTIRVIIVDDQAMVRAGFAALLSAQPDIDVVGEAPDGRQGVQVSRTVHPDVVLMDVRMPEMDGLSAARELLDPPPGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVDRRPAPRRDPALRLNGL
TPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLGKLDLRDRAQAVIFAYEAGLVRPGDGG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=648738 OHU74_RS32795 WP_371619263.1 7188101..7188781(-) (vraR) [Streptomyces sp. NBC_00454]
TTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCGGGGTTCGCCGCGCTGTTGTCCGCGCAGCCCGA
CATCGACGTGGTGGGCGAGGCCCCGGACGGACGCCAGGGCGTCCAGGTCTCCCGCACCGTCCACCCCGACGTGGTGCTGA
TGGACGTGCGGATGCCGGAGATGGACGGGCTGAGCGCGGCCCGCGAGCTCCTCGATCCCCCGCCGGGGGTGGTGCACCGG
CCCAAGGTGCTGATGCTGACCACCTTCGACATCGACGACTACGTGTACGAGGCCCTGCGCGCCGGAGCCTCCGGGTTCCT
GCTCAAGGACGCCCCGCCGGCCGATCTGATCGCGGCGGTCCGGGTGGTCGCCTCGGGCGAGGCCCTGCTGGCCCCTTCGG
TGACCCGGCGGCTGATCGCGGACTTCGTCGACCGGCGGCCCGCGCCGCGCAGGGATCCGGCGCTGCGGCTGAACGGGCTG
ACCCCGCGCGAGACCGAGGTACTGGAACTCATCGCGCGCGGGCTGTCGAACCAGGAGATCGCCGGCCACCTGGTGCTCGC
CGAGCAGACGGTCAAGACCCACATCGGGCGGGTGCTGGGCAAGCTGGACCTCCGGGACCGGGCCCAGGCCGTGATCTTCG
CCTACGAGGCCGGGCTGGTGCGGCCGGGCGACGGCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.724

97.788

0.398
  degU Bacillus subtilis subsp. subtilis str. 168

37.885

100

0.381