Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHU74_RS20515 Genome accession   NZ_CP107907
Coordinates   4419674..4421089 (-) Length   471 a.a.
NCBI ID   WP_330297895.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00454     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4414674..4426089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU74_RS20490 (OHU74_20495) - 4414860..4415420 (-) 561 WP_069920779.1 SigE family RNA polymerase sigma factor -
  OHU74_RS20495 (OHU74_20500) - 4415596..4416582 (-) 987 WP_371617264.1 A/G-specific adenine glycosylase -
  OHU74_RS20500 (OHU74_20505) - 4416600..4417208 (-) 609 WP_371617265.1 phosphatase PAP2 family protein -
  OHU74_RS20505 (OHU74_20510) - 4417379..4418188 (+) 810 WP_371617266.1 hypothetical protein -
  OHU74_RS20510 (OHU74_20515) disA 4418281..4419405 (-) 1125 WP_330297894.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHU74_RS20515 (OHU74_20520) radA/sms 4419674..4421089 (-) 1416 WP_330297895.1 DNA repair protein RadA Machinery gene
  OHU74_RS20520 (OHU74_20525) - 4421285..4423123 (+) 1839 WP_371617267.1 hypothetical protein -
  OHU74_RS20525 (OHU74_20530) - 4423136..4424014 (-) 879 WP_371617268.1 hypothetical protein -
  OHU74_RS20530 (OHU74_20535) - 4424078..4425007 (+) 930 WP_330297898.1 Ppx/GppA phosphatase family protein -
  OHU74_RS20535 (OHU74_20540) - 4425062..4425253 (+) 192 Protein_4037 DNA-binding protein -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 49307.39 Da        Isoelectric Point: 7.6866

>NTDB_id=648707 OHU74_RS20515 WP_330297895.1 4419674..4421089(-) (radA/sms) [Streptomyces sp. NBC_00454]
MAARTSRSSAKDRPSYRCTECGYSTAKWLGRCPECQAWGTVEELGGAPAVRTTAAGRVTTAAVPIGQVDVRTATARSTGV
SELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLYVTGEESASQVRLRADRINALSDHLFLAAETDLS
AVLGHLDAVNPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVV
LSFEGDRHARLRLVRGVKNRYGTTDEVGCFELTDEGINGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAYRLGFTHALVPVDPGKVPAGMKVTEVADMGDALRVLPRGRSRTAEKDRDAG

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=648707 OHU74_RS20515 WP_330297895.1 4419674..4421089(-) (radA/sms) [Streptomyces sp. NBC_00454]
ATGGCTGCCCGTACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGTTGTACCGAGTGCGGGTACTCCACCGCCAA
ATGGCTCGGCCGGTGCCCCGAGTGCCAGGCCTGGGGCACCGTGGAGGAGCTGGGCGGCGCGCCCGCCGTGCGGACCACCG
CGGCGGGCCGGGTCACCACGGCCGCCGTGCCGATCGGGCAGGTCGACGTGCGGACGGCGACCGCGCGCAGCACCGGCGTG
AGCGAGCTGGACCGGGTGCTGGGCGGCGGGCTGGTCCCCGGGGCGGTCGTGCTGCTCGCGGGCGAACCGGGCGTCGGCAA
GTCCACGCTGCTGCTCGACGTCGCGGCCAAGGCCGCCTCCGAGGAGCACCGCACGCTCTACGTCACCGGCGAGGAGTCGG
CGAGCCAGGTCCGGCTGCGGGCCGACCGGATCAACGCGCTCAGCGACCACCTCTTCCTGGCCGCCGAGACCGATCTCTCC
GCCGTCCTCGGGCACCTCGACGCCGTGAACCCCTCGCTCCTGATCATGGACTCCGTACAGACGGTGGCCTCCCCCGAGAT
CGACGGCGCGCCCGGCGGCATGGCCCAGGTCCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGT
CCACGCTGCTGGTCGGCCACGTCACCAAGGACGGGGCGATCGCCGGTCCCCGGCTGCTGGAGCACCTGGTCGACGTCGTC
CTGAGCTTCGAGGGCGACCGGCACGCGCGGCTGCGCCTCGTACGCGGTGTGAAGAACCGGTACGGCACCACGGACGAGGT
CGGCTGCTTCGAGCTCACCGACGAGGGCATCAACGGACTCGCCGACCCGAGCGGGCTGTTCCTGACCCGCCGCGCCGAGG
CCGTCCCGGGCACCTGCCTGACGGTGACGCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACGGTGGAC
TCGCAGATCCCCTCGCCGCGCCGGACCACCTCGGGGCTGGAGACCTCGCGGGTCTCGATGATGCTGGCGGTGCTGGAGCA
GCGCGGCCGGATCACGGCGCTGGGCAAGCGGGACATCTACACCGCGACCGTGGGCGGCGTGAAGCTCACCGAGCCGGCCG
CCGACCTGGCCGTCGCGCTGGCACTGGCCTCGGCCGCCAGCGACGTACCGCTCCCGAAGAACCTGGTCGCCATCGGCGAG
GTCGGGCTCGCGGGCGAGGTGCGGCGGGTGACGGGAGTCCAGCGGCGGCTCGCGGAGGCCTACCGGCTGGGCTTCACGCA
CGCGCTGGTGCCGGTGGATCCGGGGAAGGTGCCGGCCGGGATGAAGGTGACCGAGGTCGCCGACATGGGCGACGCGCTAC
GGGTCCTGCCGCGCGGCCGGTCGCGTACGGCGGAGAAGGACCGGGACGCGGGCTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(373-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

AAA domain (AAA_25)

(83-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.826

96.178

0.412
  radA Streptococcus pneumoniae Rx1

43.868

90.021

0.395
  radA Streptococcus pneumoniae D39

43.868

90.021

0.395
  radA Streptococcus pneumoniae R6

43.868

90.021

0.395
  radA Streptococcus pneumoniae TIGR4

43.868

90.021

0.395
  radA Streptococcus mitis SK321

43.868

90.021

0.395
  radA Streptococcus mitis NCTC 12261

43.868

90.021

0.395