Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHU74_RS19555 Genome accession   NZ_CP107907
Coordinates   4189127..4189726 (+) Length   199 a.a.
NCBI ID   WP_330297710.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00454     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4184127..4194726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU74_RS19535 (OHU74_19540) - 4184251..4186740 (+) 2490 WP_371617110.1 glycosyltransferase -
  OHU74_RS19540 (OHU74_19545) - 4186860..4187510 (+) 651 WP_330297707.1 hypothetical protein -
  OHU74_RS19545 (OHU74_19550) - 4187715..4188440 (-) 726 WP_371617111.1 SLATT domain-containing protein -
  OHU74_RS19550 (OHU74_19555) - 4188730..4189074 (+) 345 WP_330297709.1 YbaB/EbfC family nucleoid-associated protein -
  OHU74_RS19555 (OHU74_19560) recR 4189127..4189726 (+) 600 WP_330297710.1 recombination mediator RecR Machinery gene
  OHU74_RS19560 (OHU74_19565) - 4189719..4190366 (+) 648 WP_330297711.1 DUF5063 domain-containing protein -
  OHU74_RS19565 (OHU74_19570) - 4190528..4191802 (+) 1275 WP_371617112.1 aspartate kinase -
  OHU74_RS19570 (OHU74_19575) - 4191799..4192887 (+) 1089 WP_371617113.1 aspartate-semialdehyde dehydrogenase -
  OHU74_RS19575 (OHU74_19580) - 4193096..4193839 (+) 744 WP_371619735.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21858.20 Da        Isoelectric Point: 5.1721

>NTDB_id=648702 OHU74_RS19555 WP_330297710.1 4189127..4189726(+) (recR) [Streptomyces sp. NBC_00454]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCNICRDPRRDLSV
ICVVEESKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=648702 OHU74_RS19555 WP_330297710.1 4189127..4189726(+) (recR) [Streptomyces sp. NBC_00454]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGATGTCCGCCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGCGACCCGCGCCGCGACCTGTCGGTC
ATCTGTGTGGTCGAGGAGTCGAAGGATGTGGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCCGGTACCACGTCCTCGG
CGGTGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGGGAGCTGCTGGCGCGGCTGGCGGACGGCG
CGGTTACCGAGCTGATCCTGGCGACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACGTACCTCGCGCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467