Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHU74_RS16270 Genome accession   NZ_CP107907
Coordinates   3518705..3519325 (+) Length   206 a.a.
NCBI ID   WP_371616587.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00454     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3513705..3524325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU74_RS16245 (OHU74_16245) - 3513714..3514289 (+) 576 WP_330297153.1 TerD family protein -
  OHU74_RS16250 (OHU74_16250) - 3514435..3514962 (+) 528 WP_371616585.1 N-acetyltransferase family protein -
  OHU74_RS16255 (OHU74_16255) - 3515043..3516476 (-) 1434 WP_371616586.1 M1 family metallopeptidase -
  OHU74_RS16260 (OHU74_16260) - 3516517..3517056 (-) 540 WP_330297156.1 heme-binding protein -
  OHU74_RS16265 (OHU74_16265) - 3517545..3518708 (+) 1164 WP_371619706.1 sensor histidine kinase -
  OHU74_RS16270 (OHU74_16270) vraR 3518705..3519325 (+) 621 WP_371616587.1 response regulator Regulator
  OHU74_RS16275 (OHU74_16275) - 3519429..3519932 (+) 504 WP_330297158.1 hypothetical protein -
  OHU74_RS16280 (OHU74_16280) - 3519997..3520671 (-) 675 WP_371616588.1 pentapeptide repeat-containing protein -
  OHU74_RS16285 (OHU74_16285) - 3520842..3521834 (+) 993 WP_371619707.1 zinc-binding dehydrogenase -
  OHU74_RS16290 (OHU74_16290) - 3522054..3523064 (-) 1011 WP_371616589.1 quinone oxidoreductase -
  OHU74_RS16295 (OHU74_16295) - 3523082..3523324 (-) 243 WP_371616590.1 hypothetical protein -
  OHU74_RS16300 (OHU74_16300) - 3523574..3524047 (-) 474 WP_371616591.1 N-acetyltransferase family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21822.02 Da        Isoelectric Point: 5.6407

>NTDB_id=648694 OHU74_RS16270 WP_371616587.1 3518705..3519325(+) (vraR) [Streptomyces sp. NBC_00454]
MTTILLCDDHVVVRAGLLALLGSEPDIEVLGEAGSGEEAVALAAKLRPDVVLMDLQLGEGIDGVEATRRITAGQNPPHVL
VLTTYDTDADITRAIGAGATGYLLKAERPEELFSAIHSAAQGRTTLSPPVASRVMAHMRGTRPTLTDRELDILGQLARGL
GNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLS

Nucleotide


Download         Length: 621 bp        

>NTDB_id=648694 OHU74_RS16270 WP_371616587.1 3518705..3519325(+) (vraR) [Streptomyces sp. NBC_00454]
ATGACGACGATCCTCCTGTGCGACGACCACGTCGTGGTCCGCGCCGGACTGCTCGCCCTCCTCGGCAGCGAACCGGACAT
CGAGGTCCTCGGCGAGGCCGGCAGCGGCGAGGAGGCGGTCGCGCTGGCGGCGAAGCTCCGCCCCGACGTGGTCCTCATGG
ACCTCCAGCTCGGCGAGGGCATCGACGGGGTCGAGGCCACGCGCCGCATCACGGCGGGCCAGAACCCGCCCCACGTCCTG
GTCCTGACCACCTACGACACGGACGCGGACATCACCCGGGCCATCGGCGCGGGCGCCACGGGCTACCTGCTCAAGGCCGA
GCGCCCGGAGGAGCTCTTCTCCGCGATCCACTCGGCGGCGCAGGGCCGCACCACCCTCTCCCCGCCCGTGGCCAGCCGCG
TGATGGCCCACATGCGCGGAACCCGCCCCACCCTGACGGACCGTGAACTCGACATCCTCGGCCAGCTGGCCCGCGGCCTC
GGCAACCGCGACATCGCCCGCGCACTGTTCATCAGCGAAGCCACGGTCAAGACCCACCTGGGCCGCATCTACGACAAACT
CGGCGTCGACACCCGCGCGGGCGCGGTGGCCGTGGCCAAGGAGCAGCGCCTCCTCTCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(144-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.024

99.515

0.388
  degU Bacillus subtilis subsp. subtilis str. 168

35.023

100

0.369