Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHU74_RS07875 Genome accession   NZ_CP107907
Coordinates   1695463..1696137 (-) Length   224 a.a.
NCBI ID   WP_371615217.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00454     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1690463..1701137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU74_RS07845 (OHU74_07845) - 1690692..1691462 (-) 771 WP_371619608.1 sulfite exporter TauE/SafE family protein -
  OHU74_RS07850 (OHU74_07850) - 1691562..1692548 (-) 987 WP_371615215.1 SPFH domain-containing protein -
  OHU74_RS07855 (OHU74_07855) - 1692633..1693064 (-) 432 WP_330295692.1 NfeD family protein -
  OHU74_RS07860 (OHU74_07860) - 1693125..1693919 (-) 795 WP_330295693.1 ABC transporter ATP-binding protein -
  OHU74_RS07865 (OHU74_07865) - 1694065..1694856 (+) 792 WP_371615216.1 hypothetical protein -
  OHU74_RS07870 (OHU74_07870) - 1695106..1695351 (-) 246 WP_330295695.1 chaplin -
  OHU74_RS07875 (OHU74_07875) vraR 1695463..1696137 (-) 675 WP_371615217.1 response regulator Regulator
  OHU74_RS07880 (OHU74_07880) - 1696130..1697344 (-) 1215 WP_371615218.1 GAF domain-containing sensor histidine kinase -
  OHU74_RS07885 (OHU74_07885) - 1697981..1698658 (+) 678 WP_371615219.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24343.62 Da        Isoelectric Point: 6.1620

>NTDB_id=648675 OHU74_RS07875 WP_371615217.1 1695463..1696137(-) (vraR) [Streptomyces sp. NBC_00454]
MADASGRSSRTVGSGTRVLLVDDHQVVRRGLRTFLEVQEDIEVVGEASDGEEGIARAEELRPDVILMDIKMPGTDGIEAL
RRLRALANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAAAIRSVHAGHVLLQPEVAETLLSEEGHPPSPGRG
GSLTDREREVLRHIADGRSNREIARSLVLSEKTVKTHVSNILMKLDVTDRTQAALWAVRHGLTE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=648675 OHU74_RS07875 WP_371615217.1 1695463..1696137(-) (vraR) [Streptomyces sp. NBC_00454]
GTGGCTGACGCTTCCGGCCGGAGCAGCCGCACCGTCGGCAGCGGCACAAGGGTGCTGCTCGTCGACGACCACCAGGTGGT
CCGCCGCGGACTGCGCACCTTCCTGGAGGTCCAGGAGGACATCGAGGTGGTCGGCGAGGCCTCCGACGGAGAAGAGGGCA
TCGCCCGCGCGGAGGAGCTGCGCCCCGACGTCATCCTGATGGACATCAAGATGCCGGGCACCGACGGCATCGAGGCCCTA
CGGAGGCTGCGCGCGCTGGCGAACCCGGCCCGCGTGCTCATCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTCCCCGC
CCTGCGCGCGGGCGCCGCCGGATACGTCTACAAGGACATCGACCCCGACGCCCTCGCCGCCGCCATCCGCTCGGTCCACG
CCGGCCACGTCCTCCTCCAGCCGGAGGTCGCGGAGACCCTGCTCTCCGAGGAGGGCCACCCGCCGTCCCCCGGCCGCGGG
GGCTCCCTGACCGACCGCGAGCGCGAGGTGCTCCGGCACATTGCGGACGGGCGCTCGAACCGGGAGATCGCCCGCTCGCT
GGTCCTCTCGGAGAAGACGGTCAAGACGCACGTTTCGAACATCCTGATGAAGCTGGACGTCACCGACCGCACCCAGGCGG
CGCTCTGGGCGGTCAGACACGGACTCACCGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(18-130)

Bacterial regulatory proteins, luxR family (GerE)

(162-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.231

92.857

0.411
  degU Bacillus subtilis subsp. subtilis str. 168

40.265

100

0.406