Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG828_RS45230 Genome accession   NZ_CP107905
Coordinates   9913087..9913734 (-) Length   215 a.a.
NCBI ID   WP_328504420.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00457     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9908087..9918734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG828_RS45215 (OG828_45190) - 9908635..9910893 (+) 2259 WP_328504418.1 MMPL family transporter -
  OG828_RS45220 (OG828_45195) - 9910901..9912226 (+) 1326 WP_328441974.1 sensor histidine kinase -
  OG828_RS45225 (OG828_45200) - 9912223..9912915 (+) 693 WP_328504419.1 response regulator transcription factor -
  OG828_RS45230 (OG828_45205) vraR 9913087..9913734 (-) 648 WP_328504420.1 response regulator transcription factor Regulator
  OG828_RS45235 (OG828_45210) - 9913731..9914978 (-) 1248 WP_328504421.1 sensor histidine kinase -
  OG828_RS45240 (OG828_45215) lgt 9915156..9916022 (+) 867 WP_328504422.1 prolipoprotein diacylglyceryl transferase -
  OG828_RS45245 (OG828_45220) - 9916053..9916484 (+) 432 WP_328504423.1 DUF6069 family protein -
  OG828_RS45250 (OG828_45225) - 9916635..9918146 (+) 1512 WP_328504424.1 FG-GAP repeat protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 22316.59 Da        Isoelectric Point: 6.4928

>NTDB_id=648650 OG828_RS45230 WP_328504420.1 9913087..9913734(-) (vraR) [Streptomyces sp. NBC_00457]
MSTSTSPPIRILLADDHLVVREGLAAILATQPDLTVVGEAASGTEAVHQTTSLAPDVVLMDLQMPGMDGTAATAAIRATQ
PEVRVLILTTYDTDADITAAVDAGAVGYLLKDTGRHELCEAVRTAARGGAALSPTVAAKVLAHMRGDRAAGLSGRELEVL
SAVARGQSNKQIARALRLSEATVKTHLLHIYAKLDVADRTAAVTAALGRGIIRID

Nucleotide


Download         Length: 648 bp        

>NTDB_id=648650 OG828_RS45230 WP_328504420.1 9913087..9913734(-) (vraR) [Streptomyces sp. NBC_00457]
ATGAGCACTTCGACCTCCCCTCCGATCCGCATCCTCCTCGCAGACGACCACCTCGTCGTCCGCGAGGGGCTGGCCGCCAT
CCTCGCCACCCAGCCCGACCTCACGGTCGTCGGCGAAGCAGCCAGCGGTACCGAGGCAGTGCACCAGACCACCTCACTCG
CACCCGATGTCGTCCTGATGGACCTGCAGATGCCCGGCATGGACGGCACGGCCGCGACCGCCGCCATCCGTGCCACCCAG
CCCGAGGTGCGGGTCCTCATCCTGACCACCTACGACACGGACGCCGACATCACCGCAGCCGTCGACGCCGGCGCGGTCGG
CTACCTGCTCAAGGACACCGGACGACACGAACTGTGCGAGGCCGTGCGTACCGCGGCCCGGGGAGGTGCGGCACTGTCCC
CCACTGTGGCCGCCAAAGTTCTCGCCCACATGCGCGGTGACCGGGCTGCCGGGCTGTCCGGCCGGGAACTCGAAGTTCTG
TCGGCCGTGGCCCGCGGGCAGAGCAACAAGCAGATCGCCCGCGCCCTGCGCCTGTCCGAGGCCACGGTCAAGACCCATCT
GCTGCACATCTACGCCAAGCTCGACGTCGCCGACCGCACCGCCGCCGTCACCGCCGCACTGGGCCGCGGAATCATCCGCA
TCGACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-205)

Response regulator receiver domain (Response_reg)

(11-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.029

96.279

0.405
  degU Bacillus subtilis subsp. subtilis str. 168

36.444

100

0.381