Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG828_RS41560 Genome accession   NZ_CP107905
Coordinates   9072410..9073072 (-) Length   220 a.a.
NCBI ID   WP_328368824.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00457     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9067410..9078072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG828_RS41540 (OG828_41510) - 9068244..9069074 (-) 831 WP_328504056.1 alpha/beta fold hydrolase -
  OG828_RS41545 (OG828_41515) sigJ 9069218..9070105 (+) 888 WP_328368817.1 RNA polymerase sigma factor SigJ -
  OG828_RS41550 (OG828_41520) - 9070226..9070987 (+) 762 WP_328504057.1 GntR family transcriptional regulator -
  OG828_RS41555 (OG828_41525) - 9071076..9072233 (-) 1158 WP_328441726.1 ROK family transcriptional regulator -
  OG828_RS41560 (OG828_41530) vraR 9072410..9073072 (-) 663 WP_328368824.1 response regulator transcription factor Regulator
  OG828_RS41565 (OG828_41535) - 9073087..9074256 (-) 1170 WP_328504058.1 histidine kinase -
  OG828_RS41570 (OG828_41540) - 9074365..9075285 (+) 921 WP_328504059.1 ABC transporter ATP-binding protein -
  OG828_RS41575 (OG828_41545) - 9075287..9076012 (+) 726 WP_328504060.1 ABC transporter permease -
  OG828_RS41580 (OG828_41550) - 9076070..9076516 (+) 447 WP_328504061.1 hypothetical protein -
  OG828_RS41585 (OG828_41555) mug 9076521..9077066 (-) 546 WP_328505028.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23496.09 Da        Isoelectric Point: 4.7614

>NTDB_id=648642 OG828_RS41560 WP_328368824.1 9072410..9073072(-) (vraR) [Streptomyces sp. NBC_00457]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVDDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYADGGGNRAARAVMERAQLTER
EAEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=648642 OG828_RS41560 WP_328368824.1 9072410..9073072(-) (vraR) [Streptomyces sp. NBC_00457]
ATGCCGGTCACCGTTCTCCTCGTCGACGACGAGCCCCTTGTCCGAGCGGGTCTGCGGGCCGTGCTGGAGGCGCAGCCCGA
CATCGAGGTGGTCGGCGAGGCGGCCGACGGGGCGGCGGTGATCCCGCTGGTGCGGCAGTTGCGGCCGGACGTGGTCGCCA
TGGACGTACGGATGCCGCTCCTTGACGGCATCGAGGCCACGCGCGCGGTGCTGCGGACGGTGGACGATCCGCCGAAGATC
CTGGTGGTGACGACCTTCGAGAACGACGAGTACGTGTATGAGGCGCTTCGGGCCGGTGCCGACGGGTTCCTGCTGAAGCG
GGCCCGGCCCGCCGAGATCGTGCACGCGGTGCGGCTGGTCGCCGAGGGCGAGTCGCTGCTGTTCCCGGCCTCGGTGCGGC
AGCTCGCCGCCGAGTACGCGGACGGCGGCGGGAACCGCGCGGCCCGCGCCGTGATGGAGCGGGCCCAGTTGACCGAGCGG
GAGGCCGAGGTGCTGCGGCTGATGGCCAGAGGGCTGTCGAACGCGGAGATCGCCGCCCGGCTGGTCGTCGGCACGGAGAC
GGTCAAGTCGCATGTCAGCGCCGTCCTGGCCAAGTTGGGAGCCCGCGATCGCACACAGGCGGTGATCGCGGCGTACGAGT
CGGGGTTCGTCGCGCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.096

99.545

0.409
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.368