Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG828_RS33530 Genome accession   NZ_CP107905
Coordinates   7365209..7367137 (-) Length   642 a.a.
NCBI ID   WP_328503260.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00457     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7360209..7372137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG828_RS33515 (OG828_33480) - 7360375..7361640 (+) 1266 WP_328364881.1 FAD-dependent oxidoreductase -
  OG828_RS33520 (OG828_33485) dnaG 7361689..7363587 (+) 1899 WP_328503259.1 DNA primase -
  OG828_RS33525 (OG828_33490) - 7363753..7365027 (+) 1275 WP_328364886.1 RNA polymerase sigma factor -
  OG828_RS33530 (OG828_33495) rcrQ 7365209..7367137 (-) 1929 WP_328503260.1 ABC transporter ATP-binding protein Regulator
  OG828_RS33535 (OG828_33500) rcrP 7367137..7368870 (-) 1734 WP_328503261.1 ABC transporter ATP-binding protein Regulator
  OG828_RS33540 (OG828_33505) - 7369054..7370508 (-) 1455 WP_328364895.1 FGGY family carbohydrate kinase -
  OG828_RS33545 (OG828_33510) - 7370660..7370959 (-) 300 WP_328503262.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69761.14 Da        Isoelectric Point: 5.9752

>NTDB_id=648623 OG828_RS33530 WP_328503260.1 7365209..7367137(-) (rcrQ) [Streptomyces sp. NBC_00457]
MAGPAGRMMAGTGPEHRSMDFKGSGKRLVAQFRPERLTICALLLCVVVSVGLSVVGPKILGHATDLVFAGIVGRQFEAGS
TKEQVLHAMRERGDGSVADMLRSTDFTPGQGVDFDAVGSVLLLALGVFVVAGLLMLVATRLVNRSVNRTMYRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHALVKVFGRQDESARQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASSERIFEVLDAEEQEADPMPGERPEELRGRVALE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIVRMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHGELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=648623 OG828_RS33530 WP_328503260.1 7365209..7367137(-) (rcrQ) [Streptomyces sp. NBC_00457]
ATGGCCGGGCCTGCAGGGCGGATGATGGCCGGGACGGGGCCCGAGCACCGCTCGATGGACTTCAAGGGGTCGGGCAAACG
GCTCGTCGCCCAGTTCAGACCCGAACGGCTCACGATCTGCGCGCTGCTGCTGTGCGTGGTGGTGAGCGTGGGCCTGTCGG
TGGTCGGGCCGAAGATCCTCGGCCACGCGACCGACCTGGTCTTCGCGGGCATCGTCGGGCGCCAGTTCGAGGCCGGGTCC
ACCAAGGAGCAGGTGCTCCATGCCATGCGGGAGCGGGGTGACGGCTCGGTCGCCGACATGCTCCGCAGCACGGACTTCAC
GCCGGGTCAGGGCGTCGACTTCGATGCGGTCGGCTCCGTACTGCTGCTCGCGCTGGGCGTGTTCGTGGTGGCGGGGCTGC
TGATGCTGGTGGCGACGCGGCTGGTGAACCGTTCCGTGAACCGGACGATGTACCGGATGCGGGAGGACGTACAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGTCCCGTGCCACCAACGACATCGACAA
CATCGGGCAGACGTTGCAGCAGTCGATGGGGCAGCTCATCAACTCCGTGCTCACCATCATCGGTGTGCTCGCGATGATGT
TCTGGGTGTCCTGGATCCTGGCGCTGGTGGCGCTGGTGACCGTGCCGCTGTCGTTCGTCGTCGCCACCCGGGTCGGGAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGGAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CGCGCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGCGGCAGTTCGCCGAGCAGAACGACGCGTTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTACGTGCTGGTCGCG
GTGGTCGGTGGCCTGCGGGTCGCGTCCGGCTCGCTGTCCATCGGTGATGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCCATGCCGCTCACGCAGGTCGCGTCGATGGCGAACCTCGTGCAGTCCGGGGTCGCCTCGTCCGAGCGGATCTTCGAAG
TCCTCGACGCCGAGGAGCAGGAGGCCGATCCGATGCCGGGCGAGCGGCCGGAGGAGCTGCGCGGGCGGGTGGCGCTGGAG
CATGTGTCCTTCCGGTACGACCCCGAGAAGCCGCTCATCGAGGACCTGTCGCTGAAGGTCGAGCCCGGGCACACGGTCGC
GATCGTGGGCCCCACGGGTGCCGGCAAGACCACCCTCGTCAATCTGCTCATGCGGTTCTACGAGGTCTCCGGCGGGCGGA
TCACCCTCGACGGCGTCGACATCGTCCGGATGTCCCGGGACGAACTGCGCGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGTTGTTCGGCGGGACCATCGCCGAGAACATCGCGTACGGGGCGTCCAGGGACGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCTGCGCACGCGGACCGGTTCGTCCGGACGCTGCCGGACGGGTACGACACCGTGATCGACGACGAGGGGACCG
GGGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTTCTGTCCGATCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGTTCTGTGGACACGCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGTACGTCGTT
CGTCATCGCGCATCGGCTGTCGACGATTCGGGATGCCGACACGATTCTGGTGATGGAGAACGGGGCGATCGTGGAACAGG
GGGCGCACGGGGAGTTGCTGGCGGCCGACGGGGCTTATGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCTGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.777

96.262

0.393