Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG828_RS23105 Genome accession   NZ_CP107905
Coordinates   5097431..5098030 (-) Length   199 a.a.
NCBI ID   WP_328359952.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00457     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5092431..5103030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG828_RS23075 (OG828_23050) - 5092568..5092765 (-) 198 WP_328502188.1 hypothetical protein -
  OG828_RS23080 (OG828_23055) - 5092782..5094020 (-) 1239 WP_328502189.1 transposase -
  OG828_RS23085 (OG828_23060) - 5094530..5094988 (+) 459 WP_328502190.1 hypothetical protein -
  OG828_RS23090 (OG828_23065) - 5095091..5095837 (+) 747 WP_328502191.1 sulfite exporter TauE/SafE family protein -
  OG828_RS23095 (OG828_23070) - 5095861..5096730 (+) 870 WP_328502192.1 PhzF family phenazine biosynthesis isomerase -
  OG828_RS23100 (OG828_23075) - 5096749..5097438 (-) 690 WP_328439441.1 DUF5063 domain-containing protein -
  OG828_RS23105 (OG828_23080) recR 5097431..5098030 (-) 600 WP_328359952.1 recombination mediator RecR Machinery gene
  OG828_RS23110 (OG828_23085) - 5098122..5098466 (-) 345 WP_210580757.1 YbaB/EbfC family nucleoid-associated protein -
  OG828_RS23115 (OG828_23090) - 5098737..5099486 (+) 750 WP_328359956.1 SLATT domain-containing protein -
  OG828_RS23120 (OG828_23095) - 5099625..5101031 (-) 1407 WP_328502193.1 M20/M25/M40 family metallo-hydrolase -
  OG828_RS23125 (OG828_23100) - 5101131..5102678 (-) 1548 WP_328502194.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21847.19 Da        Isoelectric Point: 5.1616

>NTDB_id=648600 OG828_RS23105 WP_328359952.1 5097431..5098030(-) (recR) [Streptomyces sp. NBC_00457]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCAICGNVAQEENCNICRDTRRDHAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=648600 OG828_RS23105 WP_328359952.1 5097431..5098030(-) (recR) [Streptomyces sp. NBC_00457]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAACCGACAGATGTACGGCGCCTTGCGCAGGCCCTCATGGAGGTCAAGGCCAAGGTCC
GCTTCTGCGCGATCTGCGGGAACGTCGCGCAGGAGGAGAACTGCAACATCTGCCGCGACACCCGCCGCGACCACGCCGTC
ATCTGCGTGGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGCACGCGCGAGTTCCGCGGCCGCTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGTGTCGGTCCGGACGACCTGCGTATACGAGAACTTCTCGCGCGGTTGGCCGACGGGA
CGGTGACGGAACTGATCCTGGCGACGGACCCGAATCTGGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457