Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHN74_RS17900 Genome accession   NZ_CP107903
Coordinates   4101714..4103123 (+) Length   469 a.a.
NCBI ID   WP_327695546.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00459     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4096714..4108123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN74_RS17880 (OHN74_17880) - 4096789..4097628 (-) 840 WP_327695543.1 sugar phosphate isomerase/epimerase -
  OHN74_RS17885 (OHN74_17885) - 4097783..4098727 (-) 945 WP_327695544.1 Ppx/GppA phosphatase family protein -
  OHN74_RS17890 (OHN74_17890) - 4098883..4099677 (+) 795 WP_327700171.1 hypothetical protein -
  OHN74_RS17895 (OHN74_17895) - 4099694..4101496 (-) 1803 WP_327695545.1 hypothetical protein -
  OHN74_RS17900 (OHN74_17900) radA/sms 4101714..4103123 (+) 1410 WP_327695546.1 DNA repair protein RadA Machinery gene
  OHN74_RS17905 (OHN74_17905) disA 4103205..4104329 (+) 1125 WP_327695548.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHN74_RS17910 (OHN74_17910) - 4104443..4105291 (-) 849 WP_327695549.1 hypothetical protein -
  OHN74_RS17915 (OHN74_17915) - 4105652..4106593 (+) 942 WP_327695550.1 A/G-specific adenine glycosylase -
  OHN74_RS17920 (OHN74_17920) - 4106889..4107431 (+) 543 WP_006374267.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49719.92 Da        Isoelectric Point: 8.2598

>NTDB_id=648495 OHN74_RS17900 WP_327695546.1 4101714..4103123(+) (radA/sms) [Streptomyces sp. NBC_00459]
MAVRTKTAKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDVRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYITGEESASQVRLRADRIRAIDDHLFLAAETDLAAVL
GHLEAVKPSLLILDSVQTVASPEIDGAAGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVVEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVIEVADMGDALRVLPRSRRREAPRDDGDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=648495 OHN74_RS17900 WP_327695546.1 4101714..4103123(+) (radA/sms) [Streptomyces sp. NBC_00459]
ATGGCTGTTCGCACGAAGACCGCTAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCTCCGAATGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCACCGGGCC
GGGTCACCACCTCCGCGGTCCCCATCGGCCAGGTCGACGTCCGCCAGGCCACCGCCCGCAGCACCGGCGTGCCCGAGCTG
GACCGCGTACTGGGCGGCGGGCTGGTCCCCGGTGCCGTGGTTCTCGTGGCCGGTGAGCCGGGCGTGGGCAAGTCGACGCT
CCTCCTCGACGTCGCGGCGAAGTCGGCGAGCGACGAGCACCGCACGCTCTACATCACGGGTGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAGGGCGATCGACGACCACCTGTTCCTGGCCGCGGAGACGGACCTGGCGGCGGTGCTG
GGCCACCTGGAAGCCGTGAAACCGTCCCTCCTGATCCTCGACTCCGTCCAGACGGTGGCCTCGCCGGAGATCGACGGCGC
CGCGGGCGGCATGGCCCAGGTGCGCGAGGTCGCCGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCGACACTCC
TGGTGGGTCATGTCACCAAGGACGGCGCCATCGCCGGCCCGCGCCTCCTGGAACACCTGGTGGACGTGGTCCTGTCCTTC
GAGGGCGACCGGCACGCCCGCCTCCGTCTCGTCCGGGGCGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGCCTGTTCCTGACCCGGCGCGCCGAACCGGTGCCGG
GGACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTCGTCGTCGAGGTACAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCCAGGCGGACGACATCGGGGCTGGAGACGTCCCGGGTCTCGATGATGCTCGCGGTTCTCGAACAACGGGGCAG
GATCAGCGCACTCGGAAAGCGGGACATCTATTCGGCGACGGTCGGCGGGGTGAAGCTCTCCGAGCCGGCCGCGGACCTCG
CGATCGCCCTCGCGCTGGCCTCCGCCGCGAGCGACACCCCGCTGCCCAAAAACCTGGTCGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTGACGGGGGTGCAGCGCCGACTCTCCGAAGCCCACCGTCTGGGCTTCACGCACGCACTCGT
TCCCTCGGACCCCGGCAAGATCCCCGCCGGTATGAAGGTCATCGAAGTCGCCGACATGGGGGACGCGCTCCGGGTGCTTC
CGAGGTCGCGTAGGCGAGAGGCCCCACGGGACGACGGGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(77-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.588

0.422
  radA Streptococcus mitis SK321

42.384

96.588

0.409
  radA Streptococcus mitis NCTC 12261

42.384

96.588

0.409
  radA Streptococcus pneumoniae Rx1

42.444

95.949

0.407
  radA Streptococcus pneumoniae TIGR4

42.444

95.949

0.407
  radA Streptococcus pneumoniae D39

42.444

95.949

0.407
  radA Streptococcus pneumoniae R6

42.444

95.949

0.407